Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019134A_C01 KMC019134A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194105.1| leucine-rich repeat transmembrane protein kinas... 123 2e-27
dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica ... 116 2e-25
ref|NP_200638.1| leucine-rich repeat transmembrane protein kinas... 103 2e-21
ref|NP_200144.1| leucine-rich repeat transmembrane protein kinas... 102 4e-21
dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sat... 101 6e-21
>ref|NP_194105.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At4g23740.1 [Arabidopsis thaliana]
gi|7446453|pir||T05606 protein kinase homolog F9D16.210
- Arabidopsis thaliana gi|4454043|emb|CAA23040.1|
putative receptor kinase [Arabidopsis thaliana]
gi|7269223|emb|CAB81292.1| putative receptor kinase
[Arabidopsis thaliana] gi|26451766|dbj|BAC42978.1|
putative receptor kinase [Arabidopsis thaliana]
Length = 638
Score = 123 bits (308), Expect = 2e-27
Identities = 56/74 (75%), Positives = 68/74 (91%)
Frame = -1
Query: 564 IHSTGGDEVMHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIALSCVVKMPDQ 385
IH+T GDE++HLVRWVHSVVREEWTAEVFD+EL+R NIEEEMVEMLQIA+SCVVK DQ
Sbjct: 535 IHTTAGDEIIHLVRWVHSVVREEWTAEVFDIELLRYTNIEEEMVEMLQIAMSCVVKAADQ 594
Query: 384 RPKMPEIVKMIQSV 343
RPKM ++V++I++V
Sbjct: 595 RPKMSDLVRLIENV 608
>dbj|BAA94519.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9711799|dbj|BAB07903.1| putative receptor kinase
[Oryza sativa (japonica cultivar-group)]
Length = 641
Score = 116 bits (291), Expect = 2e-25
Identities = 52/81 (64%), Positives = 71/81 (87%)
Frame = -1
Query: 552 GGDEVMHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIALSCVVKMPDQRPKM 373
GG+EV+HLVRWV SVVREEWTAEVFD+ELMR PNIEEEMVEMLQIA++CV + P++RPKM
Sbjct: 541 GGNEVVHLVRWVQSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMACVSRTPERRPKM 600
Query: 372 PEIVKMIQSVKQIEMENQSSS 310
++V+M++ V++ + ++S+
Sbjct: 601 SDVVRMLEDVRRTDTGTRTST 621
>ref|NP_200638.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g58300.1, supported by cDNA: gi_18086390
[Arabidopsis thaliana] gi|8777331|dbj|BAA96921.1|
receptor-like protein kinase [Arabidopsis thaliana]
gi|18086391|gb|AAL57654.1| unknown protein [Arabidopsis
thaliana] gi|24797034|gb|AAN64529.1| At5g58299/At5g58299
[Arabidopsis thaliana]
Length = 654
Score = 103 bits (256), Expect = 2e-21
Identities = 47/91 (51%), Positives = 68/91 (74%)
Frame = -1
Query: 564 IHSTGGDEVMHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIALSCVVKMPDQ 385
+ S D+++ L RWV SVVREEWT+EVFD+ELMR NIEEEMV+MLQIA++CV ++P+
Sbjct: 556 VQSPSRDDMVDLPRWVQSVVREEWTSEVFDIELMRFQNIEEEMVQMLQIAMACVAQVPEV 615
Query: 384 RPKMPEIVKMIQSVKQIEMENQSSSSKNQAK 292
RP M ++V+MI+ ++ + E SS + +K
Sbjct: 616 RPTMDDVVRMIEEIRVSDSETTRPSSDDNSK 646
>ref|NP_200144.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g53320.1 [Arabidopsis thaliana]
gi|9759179|dbj|BAB09794.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
Length = 601
Score = 102 bits (253), Expect = 4e-21
Identities = 47/96 (48%), Positives = 69/96 (70%)
Frame = -1
Query: 555 TGGDEVMHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIALSCVVKMPDQRPK 376
TG EV +LVRWV+SVVREEWT EVFD EL+RC +EEEMVEMLQ+ + C ++P++RP
Sbjct: 499 TGKSEVANLVRWVNSVVREEWTGEVFDEELLRCTQVEEEMVEMLQVGMVCTARLPEKRPN 558
Query: 375 MPEIVKMIQSVKQIEMENQSSSSKNQAKSAMQSSPL 268
M E+V+M V++I E +S +++ + ++P+
Sbjct: 559 MIEVVRM---VEEIRPEKLASGYRSEVSTGATTTPI 591
>dbj|BAB62593.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21104781|dbj|BAB93368.1| putative
receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 637
Score = 101 bits (252), Expect = 6e-21
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = -1
Query: 546 DEVMHLVRWVHSVVREEWTAEVFDLELMRCPNIEEEMVEMLQIALSCVVKMPDQRPKMPE 367
D + HL RWV SVVREEWTAEVFD++L+R PNIE+EMV+MLQ+A++CV PDQRPKM E
Sbjct: 548 DSIEHLPRWVQSVVREEWTAEVFDVDLLRHPNIEDEMVQMLQVAMACVAAPPDQRPKMDE 607
Query: 366 IVKMIQSVKQIEMENQSSSSK 304
+++ I +E+ N S S+
Sbjct: 608 VIRRI-----VEIRNSYSGSR 623
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,621,403
Number of Sequences: 1393205
Number of extensions: 10229409
Number of successful extensions: 33692
Number of sequences better than 10.0: 396
Number of HSP's better than 10.0 without gapping: 30030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33427
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
