Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019123A_C01 KMC019123A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta... 274 4e-73
pir||B48529 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) beta ... 268 3e-71
emb|CAA56519.1| mitochondrial processing peptidase [Solanum tube... 268 3e-71
gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avi... 257 4e-68
ref|NP_186858.1| putative mitochondrial processing peptidase; pr... 256 9e-68
>gb|AAK07827.1|AF297643_1 mitochondrial processing peptidase beta subunit [Cucumis melo]
Length = 528
Score = 274 bits (700), Expect = 4e-73
Identities = 138/159 (86%), Positives = 147/159 (91%)
Frame = +3
Query: 3 LNAYTSREQTTYYAKVSQSDVPTALDILADILQNSKFEENRIIRERDVILREMEEVEGQT 182
LNAYTSREQTTYYAKV DVP ALDILADILQNSKF+E+RI RERDVILREMEEVEGQT
Sbjct: 167 LNAYTSREQTTYYAKVLDKDVPKALDILADILQNSKFDEHRISRERDVILREMEEVEGQT 226
Query: 183 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKAHLQNYIQTHYTAPRMVIAASGAIKH 362
EEVIFDHLHATAFQYTPLGRTILGPAQNI+TITK HLQ+YIQTHYTAPRMVIAASGA+KH
Sbjct: 227 EEVIFDHLHATAFQYTPLGRTILGPAQNIRTITKDHLQSYIQTHYTAPRMVIAASGAVKH 286
Query: 363 EEIVEEVKKXFTKLSTNPTTASQLVEKEQAIFTGSEVRM 479
E+ VE+VKK FTKLS PTTA+QLV KE AIFTGSEVR+
Sbjct: 287 EDFVEQVKKLFTKLSAEPTTAAQLVAKEPAIFTGSEVRI 325
>pir||B48529 ubiquinol-cytochrome-c reductase (EC 1.10.2.2) beta chain precursor
- potato gi|410634|gb|AAB28042.1| cytochrome c
reductase-processing peptidase subunit II, MPP subunit
II, P53 [potatoes, var. Marfona, tuber, Peptide
Mitochondrial, 530 aa]
Length = 530
Score = 268 bits (684), Expect = 3e-71
Identities = 133/159 (83%), Positives = 146/159 (91%)
Frame = +3
Query: 3 LNAYTSREQTTYYAKVSQSDVPTALDILADILQNSKFEENRIIRERDVILREMEEVEGQT 182
LNAYTSREQT YYAKV +DVP ALDILADILQNSKFEE +I RERDVILREMEEVEGQT
Sbjct: 169 LNAYTSREQTAYYAKVLDNDVPVALDILADILQNSKFEERKIERERDVILREMEEVEGQT 228
Query: 183 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKAHLQNYIQTHYTAPRMVIAASGAIKH 362
EEVIFDHLH+TAFQY+PLGRTILGPAQNIKTIT++HL++YI THYTAPRMVI ASG +KH
Sbjct: 229 EEVIFDHLHSTAFQYSPLGRTILGPAQNIKTITRSHLKDYISTHYTAPRMVIVASGPVKH 288
Query: 363 EEIVEEVKKXFTKLSTNPTTASQLVEKEQAIFTGSEVRM 479
EE VE+VKK FTKLSTNPTTAS+LV +E AIFTGSEVR+
Sbjct: 289 EEFVEQVKKQFTKLSTNPTTASELVAREPAIFTGSEVRV 327
>emb|CAA56519.1| mitochondrial processing peptidase [Solanum tuberosum]
Length = 530
Score = 268 bits (684), Expect = 3e-71
Identities = 133/159 (83%), Positives = 146/159 (91%)
Frame = +3
Query: 3 LNAYTSREQTTYYAKVSQSDVPTALDILADILQNSKFEENRIIRERDVILREMEEVEGQT 182
LNAYTSREQT YYAKV +DVP ALDILADILQNSKFEE +I RERDVILREMEEVEGQT
Sbjct: 169 LNAYTSREQTAYYAKVLDNDVPVALDILADILQNSKFEERKIERERDVILREMEEVEGQT 228
Query: 183 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKAHLQNYIQTHYTAPRMVIAASGAIKH 362
EEVIFDHLH+TAFQY+PLGRTILGPAQNIKTIT++HL++YI THYTAPRMVI ASG +KH
Sbjct: 229 EEVIFDHLHSTAFQYSPLGRTILGPAQNIKTITRSHLKDYISTHYTAPRMVIVASGPVKH 288
Query: 363 EEIVEEVKKXFTKLSTNPTTASQLVEKEQAIFTGSEVRM 479
EE VE+VKK FTKLSTNPTTAS+LV +E AIFTGSEVR+
Sbjct: 289 EEFVEQVKKQFTKLSTNPTTASELVAREPAIFTGSEVRV 327
>gb|AAK51086.1|AF363285_1 mitochondrial processing peptidase [Avicennia marina]
Length = 527
Score = 257 bits (657), Expect = 4e-68
Identities = 130/160 (81%), Positives = 143/160 (89%), Gaps = 1/160 (0%)
Frame = +3
Query: 3 LNAYTSREQTTYYAKVSQSDVPTALDILADILQNSKFEENRIIRERDVILREMEEVEGQT 182
LNAYTSREQTTYYAKV DVP ALDIL+DILQNS+F+E RIIRERDVILREMEEVEGQT
Sbjct: 165 LNAYTSREQTTYYAKVMDKDVPRALDILSDILQNSRFDEQRIIRERDVILREMEEVEGQT 224
Query: 183 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKAHLQNYIQTHYTAPRMVIAASGAIKH 362
EEVIFDHLHA+AFQYTPLGRTILGPA+NIK I K HL+ YI THYTAPR V+ ASGA+KH
Sbjct: 225 EEVIFDHLHASAFQYTPLGRTILGPAENIKKIGKEHLRTYISTHYTAPRTVVVASGAVKH 284
Query: 363 EEIVEEVKKXFTKLSTNPTTASQLVEKEQAI-FTGSEVRM 479
E+ VEEVKK FT+LS++PTTAS+LV KE AI FTGSEVRM
Sbjct: 285 EDFVEEVKKLFTRLSSDPTTASELVAKEPAIFFTGSEVRM 324
>ref|NP_186858.1| putative mitochondrial processing peptidase; protein id:
At3g02090.1, supported by cDNA: gi_15982730 [Arabidopsis
thaliana] gi|6513923|gb|AAF14827.1|AC011664_9 putative
mitochondrial processing peptidase [Arabidopsis
thaliana] gi|22022518|gb|AAM83217.1| AT3g02090/F1C9_12
[Arabidopsis thaliana] gi|23397047|gb|AAN31809.1|
putative mitochondrial processing peptidase [Arabidopsis
thaliana] gi|23463071|gb|AAN33205.1| At3g02090/F1C9_12
[Arabidopsis thaliana] gi|25054848|gb|AAN71914.1|
putative mitochondrial processing peptidase [Arabidopsis
thaliana]
Length = 531
Score = 256 bits (654), Expect = 9e-68
Identities = 128/159 (80%), Positives = 143/159 (89%)
Frame = +3
Query: 3 LNAYTSREQTTYYAKVSQSDVPTALDILADILQNSKFEENRIIRERDVILREMEEVEGQT 182
LNAYTSREQTTYYAKV S+V ALD+LADILQNSKFEE RI RERDVILREM+EVEGQT
Sbjct: 170 LNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFEEQRINRERDVILREMQEVEGQT 229
Query: 183 EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKAHLQNYIQTHYTAPRMVIAASGAIKH 362
+EV+ DHLHATAFQYTPLGRTILGPAQN+K+IT+ LQNYI+THYTA RMVIAA+GA+KH
Sbjct: 230 DEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKH 289
Query: 363 EEIVEEVKKXFTKLSTNPTTASQLVEKEQAIFTGSEVRM 479
EE+VE+VKK FTKLS++PTT SQLV E A FTGSEVRM
Sbjct: 290 EEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRM 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,437,509
Number of Sequences: 1393205
Number of extensions: 8991580
Number of successful extensions: 30890
Number of sequences better than 10.0: 296
Number of HSP's better than 10.0 without gapping: 29194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30807
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
