Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019118A_C01 KMC019118A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200131.1| MtN3 protein-like; protein id: At5g53190.1 [Ara... 217 8e-56
dbj|BAA96219.1| unnamed protein product [Oryza sativa (japonica ... 159 3e-38
ref|NP_564140.1| expressed protein; protein id: At1g21460.1, sup... 158 6e-38
dbj|BAB90353.1| B1065E10.2 [Oryza sativa (japonica cultivar-grou... 145 4e-34
ref|NP_566493.1| expressed protein; protein id: At3g14770.1, sup... 133 2e-30
>ref|NP_200131.1| MtN3 protein-like; protein id: At5g53190.1 [Arabidopsis thaliana]
gi|9758000|dbj|BAB08422.1| MtN3 protein-like
[Arabidopsis thaliana]
Length = 261
Score = 217 bits (553), Expect = 8e-56
Identities = 102/176 (57%), Positives = 132/176 (74%)
Frame = +2
Query: 71 VLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENF 250
+LGN AS+ LY AP+VTF RV +KKSTEEFSC PY++ L NCL++TWYGLP VS+ WEN
Sbjct: 11 ILGNGASLLLYTAPIVTFSRVFKKKSTEEFSCFPYVMTLFNCLIYTWYGLPIVSHLWENL 70
Query: 251 PLVTVNGVGIALELSYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFAFHDSTHK 430
PLVT+NGVGI LE ++ IYF++AS K KV V +PV++ F +T +S F D H+
Sbjct: 71 PLVTINGVGILLESIFIFIYFYYASPKEKVGVTF--VPVIVGFGLTTAISALVFDDHRHR 128
Query: 431 KLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGIL 598
K VGS+GL S++MYGSPLV MKKV++T+SVE+MP LS + AS+LWL YG+L
Sbjct: 129 KSFVGSVGLVASISMYGSPLVVMKKVIETRSVEYMPFYLSFFSFLASSLWLAYGLL 184
Score = 34.7 bits (78), Expect = 0.95
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +2
Query: 431 KLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGI 595
+L +G LG G S+ +Y +P+V +V + KS E + T F ++ YG+
Sbjct: 6 RLSIGILGNGASLLLYTAPIVTFSRVFKKKSTEEFSCFPYVMTLFNCLIYTWYGL 60
>dbj|BAA96219.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 244
Score = 159 bits (402), Expect = 3e-38
Identities = 84/179 (46%), Positives = 116/179 (63%), Gaps = 3/179 (1%)
Frame = +2
Query: 71 VLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENF 250
+LGNAAS+ LYAAP++TF+RVI+K S EEFSC+PYI+ L NCLL+TWYGLP
Sbjct: 12 ILGNAASMLLYAAPILTFRRVIKKGSVEEFSCVPYILALFNCLLYTWYGLP--------- 62
Query: 251 PLVTVNGVGIALEL---SYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFAFHDS 421
V + +G+A L S + + + V + +PVL F +TA+ S F FH
Sbjct: 63 --VCLPSMGLAYCLRSHSSAYTHGLHPEKERQKFVLRMVLPVLAFFALTAIFSSFLFHTH 120
Query: 422 THKKLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGIL 598
+K+ VGS+GL S++MY SP+VA K+V+ TKSVEFMP LS+ + +S LW+ YG+L
Sbjct: 121 GLRKVFVGSIGLVASISMYSSPMVAAKQVITTKSVEFMPFYLSLFSFLSSALWMIYGLL 179
Score = 32.7 bits (73), Expect = 3.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 431 KLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGI 595
++ VG LG S+ +Y +P++ ++V++ SVE I F L+ YG+
Sbjct: 7 RVAVGILGNAASMLLYAAPILTFRRVIKKGSVEEFSCVPYILALFNCLLYTWYGL 61
>ref|NP_564140.1| expressed protein; protein id: At1g21460.1, supported by cDNA:
6411. [Arabidopsis thaliana] gi|21594011|gb|AAM65929.1|
unknown [Arabidopsis thaliana]
gi|28393568|gb|AAO42204.1| unknown protein [Arabidopsis
thaliana] gi|28973143|gb|AAO63896.1| unknown protein
[Arabidopsis thaliana]
Length = 247
Score = 158 bits (399), Expect = 6e-38
Identities = 85/176 (48%), Positives = 111/176 (62%)
Frame = +2
Query: 71 VLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENF 250
V GNA ++ L+ AP +TFKR+I+ KSTE+FS IPY + LLNCLL WYGLPFVS +N
Sbjct: 10 VFGNATALFLFLAPSITFKRIIKNKSTEQFSGIPYPMTLLNCLLSAWYGLPFVSK--DNT 67
Query: 251 PLVTVNGVGIALELSYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFAFHDSTHK 430
+ T+NG G +E YVLI+ ++A K K+K+ I VL VF A+VS+FA +
Sbjct: 68 LVSTINGTGAVIETVYVLIFLFYAPKKEKIKIFGIFSCVLAVFATVALVSLFAL-QGNGR 126
Query: 431 KLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGIL 598
KL G S+ MY SPL M+ VV+TKSVEFMP LS+ T W YG++
Sbjct: 127 KLFCGLAATVFSIIMYASPLSIMRLVVKTKSVEFMPFFLSLFVFLCGTSWFVYGLI 182
Score = 38.9 bits (89), Expect = 0.050
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +2
Query: 65 CAVLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWE 244
C + S+ +YA+P+ + V++ KS E +P+ + L L T + FV
Sbjct: 130 CGLAATVFSIIMYASPLSIMRLVVKTKSVE---FMPFFLSLFVFLCGTSW---FVYGLIG 183
Query: 245 NFPLVTV-NGVGIALELSYVLIYFWFASSKGK 337
P V + NG G AL +++YF + +KG+
Sbjct: 184 RDPFVAIPNGFGCALGTLQLILYFIYCGNKGE 215
>dbj|BAB90353.1| B1065E10.2 [Oryza sativa (japonica cultivar-group)]
gi|21952819|dbj|BAC06235.1| P0018C10.36 [Oryza sativa
(japonica cultivar-group)]
Length = 273
Score = 145 bits (366), Expect = 4e-34
Identities = 77/176 (43%), Positives = 108/176 (60%)
Frame = +2
Query: 71 VLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENF 250
V GN ++ L+ +P+VTF R+I+K+STE+FS +PY + LLNCLL WYGLPFVS N
Sbjct: 11 VSGNVIALFLFLSPVVTFWRIIKKRSTEDFSGVPYNMTLLNCLLSAWYGLPFVSP--NNI 68
Query: 251 PLVTVNGVGIALELSYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFAFHDSTHK 430
+ T+NG G +E YV+I+ FA K ++K+ + V +F + +VS+ A H +
Sbjct: 69 LVTTINGTGSVIEAIYVVIFLIFAERKARLKMMGLLGLVTSIFTMVVLVSLLALH-GQGR 127
Query: 431 KLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGIL 598
KL G S+ MY SPL M+ V++TKSVEFMP LS+ T W YG+L
Sbjct: 128 KLFCGLAATIFSICMYASPLSIMRLVIKTKSVEFMPFLLSLSVFLCGTSWFIYGLL 183
>ref|NP_566493.1| expressed protein; protein id: At3g14770.1, supported by cDNA:
gi_15809922, supported by cDNA: gi_17978878 [Arabidopsis
thaliana] gi|11994587|dbj|BAB02642.1| MtN3-like protein
[Arabidopsis thaliana] gi|15809923|gb|AAL06889.1|
AT3g14770/T21E2_2 [Arabidopsis thaliana]
gi|17978879|gb|AAL47411.1| AT3g14770/T21E2_2
[Arabidopsis thaliana]
Length = 236
Score = 133 bits (335), Expect = 2e-30
Identities = 73/180 (40%), Positives = 105/180 (57%), Gaps = 5/180 (2%)
Frame = +2
Query: 71 VLGNAASVSLYAAPMVTFKRVIRKKSTEEFSCIPYIIGLLNCLLFTWYGLPFVSNKWENF 250
+ GN + L+ +PM TF+R++R KSTE+FS +PYI LLNCL+ WYG PF+S+ N
Sbjct: 19 IAGNIFAFGLFVSPMPTFRRIMRNKSTEQFSGLPYIYALLNCLICLWYGTPFISH--SNA 76
Query: 251 PLVTVNGVGIALELSYVLIYFWFASSKGKVKVAMITIPVLLVFCITAVVSVFA-----FH 415
L+TVN VG +L Y++++ K K+K+ + L+F + AVV V
Sbjct: 77 MLMTVNSVGATFQLCYIILFIMHTDKKNKMKM------LGLLFVVFAVVGVIVAGSLQIP 130
Query: 416 DSTHKKLLVGSLGLGVSVAMYGSPLVAMKKVVQTKSVEFMPLPLSICTCFASTLWLTYGI 595
D + VG L G V+M+ SPL + V++TKSVEFMP LS+ T S +L YG+
Sbjct: 131 DQLTRWYFVGFLSCGSLVSMFASPLFVINLVIRTKSVEFMPFYLSLSTFLMSASFLLYGL 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,723,082
Number of Sequences: 1393205
Number of extensions: 11734882
Number of successful extensions: 35261
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 34035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35130
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
