Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019102A_C01 KMC019102A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA04325.1| MADS-box protein [Malus x domestica] 156 2e-37
gb|AAM21343.1|AF373602_1 MADS-box protein 3 [Vitis vinifera] 147 9e-35
ref|NP_182089.1| MADS-box protein (AGL6); protein id: At2g45650.... 124 6e-28
emb|CAD48306.1| MADS-box protein AGL6-a [Brassica oleracea var. ... 121 5e-27
emb|CAD48305.1| MADS-box protein AGL6-a [Brassica oleracea var. ... 117 1e-25
>emb|CAA04325.1| MADS-box protein [Malus x domestica]
Length = 243
Score = 156 bits (395), Expect = 2e-37
Identities = 72/108 (66%), Positives = 92/108 (84%)
Frame = -3
Query: 576 RQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAAGTSNFPF 397
RQRKT++MIEQME+LR +ERHLGDLNKQL++KLE+EG N V++N+WSS +AAG+SNF
Sbjct: 137 RQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLEAEGQNLNVIQNMWSSDAAAGSSNFSL 196
Query: 396 HPAQSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFMHGWML 253
H +Q+NPMDC PEP +Q+GYHQY AE SSIP+ S+T ETNF+ GW+L
Sbjct: 197 HSSQTNPMDCTPEPVIQMGYHQYHPAEGSSIPR-SLTGETNFIQGWVL 243
>gb|AAM21343.1|AF373602_1 MADS-box protein 3 [Vitis vinifera]
Length = 244
Score = 147 bits (371), Expect = 9e-35
Identities = 71/109 (65%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = -3
Query: 576 RQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWS-STSAAGTSNFP 400
RQRKT++MIEQME+LR +ER LGDLNKQLKLKLE+EG + K ++ W+ ST+ AG S+FP
Sbjct: 137 RQRKTQMMIEQMEDLRRKERQLGDLNKQLKLKLEAEGQSLKAIQGSWNPSTATAGNSSFP 196
Query: 399 FHPAQSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFMHGWML 253
HP+QSNPMDC+PEP LQIGYH YV AE S+ K SM E+NF+ GW+L
Sbjct: 197 VHPSQSNPMDCEPEPILQIGYHHYVPAEGPSVSK-SMAGESNFIQGWVL 244
>ref|NP_182089.1| MADS-box protein (AGL6); protein id: At2g45650.1, supported by
cDNA: gi_1019924 [Arabidopsis thaliana]
gi|1351899|sp|P29386|AGL6_ARATH Agamous-like MADS box
protein AGL6 gi|81614|pir||F39534 floral homeotic
protein AGL6 - Arabidopsis thaliana
gi|1019925|gb|AAA79328.1| transcription factor
gi|2979564|gb|AAC06173.1| MADS-box protein (AGL6)
[Arabidopsis thaliana]
Length = 252
Score = 124 bits (312), Expect = 6e-28
Identities = 58/115 (50%), Positives = 84/115 (72%), Gaps = 7/115 (6%)
Frame = -3
Query: 576 RQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAA-----GT 412
RQRKT++M+E+ME+LR +ER LGD+NKQLK+K E+EG+ K ++LW++++A+
Sbjct: 138 RQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQDLWANSAASVAGDPNN 197
Query: 411 SNFPFHPAQSNPMDCQPEPFLQIGY--HQYVQAESSSIPKNSMTCETNFMHGWML 253
S FP P+ N +DC EPFLQIG+ H YVQ E SS+ K+++ ETNF+ GW+L
Sbjct: 198 SEFPVEPSHPNVLDCNTEPFLQIGFQQHYYVQGEGSSVSKSNVAGETNFVQGWVL 252
>emb|CAD48306.1| MADS-box protein AGL6-a [Brassica oleracea var. botrytis]
Length = 252
Score = 121 bits (304), Expect = 5e-27
Identities = 56/115 (48%), Positives = 81/115 (69%), Gaps = 7/115 (6%)
Frame = -3
Query: 576 RQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAA-----GT 412
RQRKT++M+E+ME+LR +ER LGD+NKQLK+K E+ G+ K ++ W +++A+
Sbjct: 138 RQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFEAGGHAFKSFQDFWPNSAASMAGDPNN 197
Query: 411 SNFPFHPAQSNPMDCQPEPFLQIGY--HQYVQAESSSIPKNSMTCETNFMHGWML 253
S FP P+ + +DC EPFLQIG+ H YVQ E SS+PK+++ CETNF+ W L
Sbjct: 198 SKFPVQPSHPDSVDCNTEPFLQIGFQQHYYVQGEGSSVPKSNVACETNFVQDWFL 252
>emb|CAD48305.1| MADS-box protein AGL6-a [Brassica oleracea var. botrytis]
Length = 259
Score = 117 bits (293), Expect = 1e-25
Identities = 56/122 (45%), Positives = 80/122 (64%), Gaps = 14/122 (11%)
Frame = -3
Query: 576 RQRKTEIMIEQMEELRTRERHLGDLNKQLKLKLESEGYNPKVMENLWSSTSAA-----GT 412
RQRKT++M+E+ME+LR +ER LGD+NKQLK+K E+ G+ K ++ W +++A+
Sbjct: 138 RQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFEAGGHAFKSFQDFWPNSAASMAGDPNN 197
Query: 411 SNFPFHPAQSNPMDCQPEPFLQIG---------YHQYVQAESSSIPKNSMTCETNFMHGW 259
S FP P+ + +DC EPFLQIG H YVQ E SS+PK+++ CETNF+ W
Sbjct: 198 SKFPVQPSHPDSVDCNTEPFLQIGLVLVYIRFQQHYYVQGEGSSVPKSNVACETNFVQDW 257
Query: 258 ML 253
L
Sbjct: 258 FL 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,634,139
Number of Sequences: 1393205
Number of extensions: 9297887
Number of successful extensions: 20824
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 20272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20782
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
