Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019084A_C01 KMC019084A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_195609.1| similar to olfactory receptor MOR261-12 [Mus mu... 33 2.7
emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp... 32 3.5
gb|AAB53936.1| sensor/regulator protein RpfA 32 3.5
ref|XP_242577.1| hypothetical protein XP_242577 [Rattus norvegicus] 32 4.6
dbj|BAB92392.1| P0516D04.12 [Oryza sativa (japonica cultivar-gro... 32 4.6
>ref|XP_195609.1| similar to olfactory receptor MOR261-12 [Mus musculus]
Length = 220
Score = 32.7 bits (73), Expect = 2.7
Identities = 18/64 (28%), Positives = 32/64 (49%)
Frame = +3
Query: 318 FCIRNAFFSPVMNLWRNVLVLVGVPLPPSPLLPISYSSISFLLVITLRSRKPEEETEPLP 497
+ + N +P++ RN V VG P L+ +SY+SI ++ + + E + PL
Sbjct: 116 YSLFNPMLNPLIYNLRNTEVKVG----PLSLVLVSYASILMTIIRVSQKKDTENPSPPLS 171
Query: 498 PLCI 509
P C+
Sbjct: 172 PTCV 175
>emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
Length = 928
Score = 32.3 bits (72), Expect = 3.5
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = -1
Query: 348 LG*KMHFGYRILHQM*K*VRNVIDSISSEKNGDIERVHI*HMIKVEWWIVCDCD*LKSST 169
LG + F YR++ + +RN++D++ + G ++ +VE +++ + D LK+
Sbjct: 185 LGAAVIFAYRLMRDVTTPIRNMVDTVDRIRRGQLDS-------RVEGYMLGELDMLKNGI 237
Query: 168 NKRNFFITSY 139
N +T+Y
Sbjct: 238 NSMAMSLTAY 247
>gb|AAB53936.1| sensor/regulator protein RpfA
Length = 929
Score = 32.3 bits (72), Expect = 3.5
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = -1
Query: 348 LG*KMHFGYRILHQM*K*VRNVIDSISSEKNGDIERVHI*HMIKVEWWIVCDCD*LKSST 169
LG + F YR++ + +RN++D++ + G ++ +VE +++ + D LK+
Sbjct: 187 LGAAVIFAYRLMRDVTTPIRNMVDTVDRIRRGQLDS-------RVEGYMLGELDMLKNGI 239
Query: 168 NKRNFFITSY 139
N +T+Y
Sbjct: 240 NSMAMSLTAY 249
>ref|XP_242577.1| hypothetical protein XP_242577 [Rattus norvegicus]
Length = 438
Score = 32.0 bits (71), Expect = 4.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 336 FFSPVMNLWRNVLVLVGVPLPPSPLLPISYSSIS 437
F P+ W+ + VLV VP+P S L + Y+ IS
Sbjct: 238 FEDPMAESWKGIAVLVPVPVPGSSLSEVVYAGIS 271
>dbj|BAB92392.1| P0516D04.12 [Oryza sativa (japonica cultivar-group)]
gi|21902096|dbj|BAC05643.1| OJ1005_B10.8 [Oryza sativa
(japonica cultivar-group)]
Length = 137
Score = 32.0 bits (71), Expect = 4.6
Identities = 23/75 (30%), Positives = 31/75 (40%), Gaps = 1/75 (1%)
Frame = -3
Query: 505 QRGGRGSVSSSGFLLRNVITNKNEMEEYDIGSN-GDGGSGTPTRTRTLRHRFITGLKNAF 329
+R R + G+ ++ NKN +DI DGG G TR LR R T
Sbjct: 7 ERTRRNKTKAKGWRCAEIVLNKNATTIHDIADGVKDGGGGGGTRDLPLRMRSRTETATVA 66
Query: 328 RIQNSASNVKVS*KC 284
++ A VK S C
Sbjct: 67 PERSHADGVKDSGGC 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,915,673
Number of Sequences: 1393205
Number of extensions: 9060722
Number of successful extensions: 27186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27060
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
