Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019071A_C01 KMC019071A_c01
(406 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH35823.1| Similar to REV3-like, catalytic subunit of DNA po... 32 1.4
sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV... 32 1.4
gb|AAG09402.1|AF179428_1 DNA polymerase zeta catalytic subunit v... 32 1.4
ref|NP_002903.1| REV3-like, catalytic subunit of DNA polymerase ... 32 1.4
gb|AAB88486.1| DNA polymerase zeta [Homo sapiens] 32 1.4
>gb|AAH35823.1| Similar to REV3-like, catalytic subunit of DNA polymerase zeta
RAD54 like (S. cerevisiae) [Homo sapiens]
Length = 608
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 322 RNKQISFPNKRNFVEYTLSRVAAFCSLGEFRS--QPLLQQLCSSPLIMQSCSSSAMVRFD 149
++K+ S + R+ VE L A +L E QPL Q+L SP+ M S A+V
Sbjct: 359 KDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLL 418
Query: 148 AGL 140
AGL
Sbjct: 419 AGL 421
>sp|O60673|DPOZ_HUMAN DNA polymerase zeta catalytic subunit (hREV3)
gi|3063675|gb|AAC24357.1| DNA polymerase zeta catalytic
subunit [Homo sapiens] gi|3243260|gb|AAC24009.1| DNA
polymerase zeta catalytic subunit [Homo sapiens]
gi|5107941|gb|AAD40184.1|AF157476_1 DNA polymerase zeta
catalytic subunit [Homo sapiens]
Length = 3130
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 322 RNKQISFPNKRNFVEYTLSRVAAFCSLGEFRS--QPLLQQLCSSPLIMQSCSSSAMVRFD 149
++K+ S + R+ VE L A +L E QPL Q+L SP+ M S A+V
Sbjct: 359 KDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLL 418
Query: 148 AGL 140
AGL
Sbjct: 419 AGL 421
>gb|AAG09402.1|AF179428_1 DNA polymerase zeta catalytic subunit variant 1 [Homo sapiens]
gi|9957536|gb|AAG09403.1|AF179429_1 DNA polymerase zeta
catalytic subunit variant 2 [Homo sapiens]
Length = 3052
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 322 RNKQISFPNKRNFVEYTLSRVAAFCSLGEFRS--QPLLQQLCSSPLIMQSCSSSAMVRFD 149
++K+ S + R+ VE L A +L E QPL Q+L SP+ M S A+V
Sbjct: 281 KDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLL 340
Query: 148 AGL 140
AGL
Sbjct: 341 AGL 343
>ref|NP_002903.1| REV3-like, catalytic subunit of DNA polymerase zeta; Polymerase,
DNA, zeta (Rev-3, yeast, homolog of); REV3 (yeast
homolog)-like, catalytic subunit of DNA polymerase zeta;
Rev-3, yeast, homolog-like (polymerase, DNA, zeta) [Homo
sapiens] gi|3378172|gb|AAC28460.1| DNA polymerase zeta
catalytic subunit [Homo sapiens]
Length = 3052
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 322 RNKQISFPNKRNFVEYTLSRVAAFCSLGEFRS--QPLLQQLCSSPLIMQSCSSSAMVRFD 149
++K+ S + R+ VE L A +L E QPL Q+L SP+ M S A+V
Sbjct: 281 KDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLL 340
Query: 148 AGL 140
AGL
Sbjct: 341 AGL 343
>gb|AAB88486.1| DNA polymerase zeta [Homo sapiens]
Length = 3052
Score = 32.3 bits (72), Expect = 1.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 322 RNKQISFPNKRNFVEYTLSRVAAFCSLGEFRS--QPLLQQLCSSPLIMQSCSSSAMVRFD 149
++K+ S + R+ VE L A +L E QPL Q+L SP+ M S A+V
Sbjct: 281 KDKESSKGHTRHKVEEALINEEAILNLMENSQTFQPLTQRLSESPVFMDSSPDEALVHLL 340
Query: 148 AGL 140
AGL
Sbjct: 341 AGL 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,253,719
Number of Sequences: 1393205
Number of extensions: 6089090
Number of successful extensions: 15832
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15829
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
