Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019038A_C01 KMC019038A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D85091 hypothetical protein AT4g09040 [imported] - Arabidop... 62 7e-09
ref|NP_192643.2| RRM-containing protein; protein id: At4g09040.1... 62 7e-09
dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japoni... 40 0.028
ref|NP_011879.1| RNA-binding protein, interacts with MEX67; Mip6... 38 0.081
ref|NP_181084.1| chloroplast RNA-binding protein cp33, putative;... 38 0.11
>pir||D85091 hypothetical protein AT4g09040 [imported] - Arabidopsis thaliana
gi|7267547|emb|CAB78028.1| putative protein [Arabidopsis
thaliana]
Length = 225
Score = 61.6 bits (148), Expect = 7e-09
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 9/64 (14%)
Frame = -2
Query: 581 TGYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQ---------PLEESSAKPE 429
+GYGFVSFK+KK+A AAL EFQ K F+GR +R+A SK+FV+ P EE+ +P
Sbjct: 152 SGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPS 211
Query: 428 DTST 417
+ T
Sbjct: 212 QSET 215
>ref|NP_192643.2| RRM-containing protein; protein id: At4g09040.1, supported by cDNA:
105554. [Arabidopsis thaliana]
Length = 304
Score = 61.6 bits (148), Expect = 7e-09
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 9/64 (14%)
Frame = -2
Query: 581 TGYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQ---------PLEESSAKPE 429
+GYGFVSFK+KK+A AAL EFQ K F+GR +R+A SK+FV+ P EE+ +P
Sbjct: 231 SGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPS 290
Query: 428 DTST 417
+ T
Sbjct: 291 QSET 294
>dbj|BAC10140.1| putative ribonucleoprotein [Oryza sativa (japonica cultivar-group)]
Length = 264
Score = 39.7 bits (91), Expect = 0.028
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -2
Query: 578 GYGFVSFKSKKEANAALSEFQEKTFMGRSLRV-----APSKRFVQPLEESSAKPEDTSTE 414
G+GFV+ + +EA AA+ +F TF GR LRV P F D+S +
Sbjct: 122 GFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNK 181
Query: 413 LSVNGA--GVDNA 381
L V GVDN+
Sbjct: 182 LYVGNLAWGVDNS 194
>ref|NP_011879.1| RNA-binding protein, interacts with MEX67; Mip6p [Saccharomyces
cerevisiae] gi|731637|sp|P38760|YHH5_YEAST Hypothetical
75.9 kDa protein in SPO13-ARG4 intergenic region
gi|626773|pir||S46788 PES4 protein homolog YHR015w -
yeast (Saccharomyces cerevisiae)
gi|500707|gb|AAB68942.1| Yhr015wp [Saccharomyces
cerevisiae]
Length = 659
Score = 38.1 bits (87), Expect = 0.081
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -2
Query: 578 GYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKR 468
GYG+++FK K +A +A EF F G+ +++ PS +
Sbjct: 153 GYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMK 189
>ref|NP_181084.1| chloroplast RNA-binding protein cp33, putative; protein id:
At2g35410.1, supported by cDNA: gi_14596022 [Arabidopsis
thaliana] gi|25386549|pir||C84768 hypothetical protein
At2g35410 [imported] - Arabidopsis thaliana
gi|3608147|gb|AAC36180.1| putative chloroplast RNA
binding protein precursor [Arabidopsis thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA
binding protein precursor [Arabidopsis thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA
binding protein precursor [Arabidopsis thaliana]
Length = 308
Score = 37.7 bits (86), Expect = 0.11
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = -2
Query: 581 TGYGFVSFKSKKEANAALSEFQEKTFMGRSLRVAPSKRFVQPLEESSAKPEDTSTE 414
+GYGFVSF +++EA A+++ K MGR + + S R E+ + + ++E
Sbjct: 236 SGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,166,510
Number of Sequences: 1393205
Number of extensions: 8285893
Number of successful extensions: 19604
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 18931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19604
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
