Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018980A_C01 KMC018980A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G84864 probable membrane transporter [imported] - Arabidops... 129 1e-29
ref|NP_181861.2| putative membrane transporter; protein id: At2g... 129 1e-29
ref|NP_174313.1| hypothetical protein; protein id: At1g30220.1, ... 110 9e-24
ref|NP_193381.1| membrane transporter like protein; protein id: ... 94 9e-19
ref|NP_181117.1| putative sugar transporter; protein id: At2g357... 89 2e-17
>pir||G84864 probable membrane transporter [imported] - Arabidopsis thaliana
gi|2289003|gb|AAB64332.1| putative membrane transporter
[Arabidopsis thaliana]
Length = 521
Score = 129 bits (325), Expect = 1e-29
Identities = 57/90 (63%), Positives = 77/90 (85%)
Frame = -1
Query: 500 PVPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVV 321
PVPWTVNSEIYP+++RG+CGGMSATVNW+ ++I++Q+FL+I++A G G +F IL IAV+
Sbjct: 408 PVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVL 467
Query: 320 AFLFVLLFVPETKGLTFEEMTLIWKRRARG 231
A +FV++FVPET+GLTF E+ IWK RA G
Sbjct: 468 AVIFVIVFVPETQGLTFSEVEQIWKERAYG 497
>ref|NP_181861.2| putative membrane transporter; protein id: At2g43330.1, supported
by cDNA: gi_17380889, supported by cDNA: gi_20465938
[Arabidopsis thaliana] gi|17380890|gb|AAL36257.1|
putative membrane transporter protein [Arabidopsis
thaliana] gi|20465939|gb|AAM20155.1| putative membrane
transporter protein [Arabidopsis thaliana]
Length = 509
Score = 129 bits (325), Expect = 1e-29
Identities = 57/90 (63%), Positives = 77/90 (85%)
Frame = -1
Query: 500 PVPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVV 321
PVPWTVNSEIYP+++RG+CGGMSATVNW+ ++I++Q+FL+I++A G G +F IL IAV+
Sbjct: 396 PVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVL 455
Query: 320 AFLFVLLFVPETKGLTFEEMTLIWKRRARG 231
A +FV++FVPET+GLTF E+ IWK RA G
Sbjct: 456 AVIFVIVFVPETQGLTFSEVEQIWKERAYG 485
>ref|NP_174313.1| hypothetical protein; protein id: At1g30220.1, supported by cDNA:
gi_18377758 [Arabidopsis thaliana]
gi|25309027|pir||D86426 hypothetical protein F12P21.2 -
Arabidopsis thaliana
gi|12320850|gb|AAG50560.1|AC073506_2 hypothetical
protein [Arabidopsis thaliana]
gi|18377759|gb|AAL67029.1| unknown protein [Arabidopsis
thaliana] gi|21689841|gb|AAM67564.1| unknown protein
[Arabidopsis thaliana]
Length = 580
Score = 110 bits (275), Expect = 9e-24
Identities = 48/87 (55%), Positives = 70/87 (80%)
Frame = -1
Query: 497 VPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVVA 318
VPW VNSEIYP FRG+CGG++AT NW+ ++I++QSFLS+++A+G +F I GVI+V+A
Sbjct: 474 VPWIVNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIA 533
Query: 317 FLFVLLFVPETKGLTFEEMTLIWKRRA 237
LFV++ VPETKG+ EE+ + +RR+
Sbjct: 534 LLFVMVCVPETKGMPMEEIEKMLERRS 560
>ref|NP_193381.1| membrane transporter like protein; protein id: At4g16480.1
[Arabidopsis thaliana] gi|7446726|pir||F71431
hypothetical protein - Arabidopsis thaliana
gi|2245004|emb|CAB10424.1| membrane transporter like
protein [Arabidopsis thaliana]
gi|7268398|emb|CAB78690.1| membrane transporter like
protein [Arabidopsis thaliana]
gi|28393478|gb|AAO42160.1| putative membrane transporter
[Arabidopsis thaliana] gi|28973605|gb|AAO64127.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 582
Score = 94.0 bits (232), Expect = 9e-19
Identities = 45/103 (43%), Positives = 67/103 (64%), Gaps = 10/103 (9%)
Frame = -1
Query: 497 VPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVVA 318
VPW VNSEIYP +RG+ GG++A NWV ++I+S+SFLS++ A+G G+F + + +
Sbjct: 478 VPWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIG 537
Query: 317 FLFVLLFVPETKGLTFEEM----------TLIWKRRARGKDYD 219
F+ L VPETKGL FEE+ +L+ +R +GK+ D
Sbjct: 538 LFFIWLLVPETKGLQFEEVEKLLEVGFKPSLLRRREKKGKEVD 580
>ref|NP_181117.1| putative sugar transporter; protein id: At2g35740.1 [Arabidopsis
thaliana] gi|25309025|pir||D84772 probable sugar
transporter [imported] - Arabidopsis thaliana
gi|4263781|gb|AAD15441.1| putative sugar transporter
[Arabidopsis thaliana]
Length = 580
Score = 89.4 bits (220), Expect = 2e-17
Identities = 38/79 (48%), Positives = 58/79 (73%)
Frame = -1
Query: 497 VPWTVNSEIYPEEFRGVCGGMSATVNWVCSVIMSQSFLSISDAVGLGGSFAILGVIAVVA 318
VPW VNSEIYP +RG+ GG++A NW+ ++++S++FL++++AVG G+F + + V
Sbjct: 477 VPWIVNSEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVG 536
Query: 317 FLFVLLFVPETKGLTFEEM 261
F+ L VPETKGL FEE+
Sbjct: 537 LFFIWLLVPETKGLQFEEV 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,503,262
Number of Sequences: 1393205
Number of extensions: 9361943
Number of successful extensions: 28537
Number of sequences better than 10.0: 693
Number of HSP's better than 10.0 without gapping: 26944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28148
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
