Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018960A_C01 KMC018960A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564774.1| expressed protein; protein id: At1g61350.1, sup... 202 3e-51
gb|AAL14389.1| At1g61350/T1F9_16 [Arabidopsis thaliana] 201 7e-51
ref|NP_182096.1| unknown protein; protein id: At2g45720.1 [Arabi... 93 2e-18
gb|AAM92297.1| putative arm repeat containing protein [Oryza sat... 90 2e-17
ref|NP_199903.1| putative protein; protein id: At5g50900.1, supp... 79 4e-14
>ref|NP_564774.1| expressed protein; protein id: At1g61350.1, supported by cDNA:
gi_16209657, supported by cDNA: gi_18700124 [Arabidopsis
thaliana] gi|25404883|pir||B96639 protein T1F9.16
[imported] - Arabidopsis thaliana
gi|3056595|gb|AAC13906.1|AAC13906 T1F9.16 [Arabidopsis
thaliana] gi|18700125|gb|AAL77674.1| At1g61350/T1F9_16
[Arabidopsis thaliana]
Length = 573
Score = 202 bits (513), Expect = 3e-51
Identities = 105/171 (61%), Positives = 134/171 (77%), Gaps = 5/171 (2%)
Frame = -1
Query: 544 FVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAKSFEVRE 365
F+D LL +RNGE+S+QE ALKV RLC EE K+ +G+AGFM ELVKFL AKS +VRE
Sbjct: 404 FLDHLLNLLRNGEISVQESALKVTSRLCSLQEEVKRIMGEAGFMPELVKFLDAKSIDVRE 463
Query: 364 MAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEG-----NSNNQKFLISILMSLTS 200
MA+ AL ++ VP+NRK+F QDD +I+ +LQLL+ +G +S N KFLISILMSLTS
Sbjct: 464 MASVALYCLISVPRNRKKFAQDDFNISYILQLLDHEDGSNVSSDSGNTKFLISILMSLTS 523
Query: 199 CNSGKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLSGIWHS 47
CNS ++KI SSGY ++IE+LAE E SDA++LV+KL+ NRFRS+LSGIWHS
Sbjct: 524 CNSARRKIASSGYLKSIEKLAETE-GSDAKKLVKKLSMNRFRSILSGIWHS 573
>gb|AAL14389.1| At1g61350/T1F9_16 [Arabidopsis thaliana]
Length = 573
Score = 201 bits (510), Expect = 7e-51
Identities = 104/171 (60%), Positives = 134/171 (77%), Gaps = 5/171 (2%)
Frame = -1
Query: 544 FVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAKSFEVRE 365
F+D LL +RNGE+S+QE ALKV RLC EE K+ +G+AGFM ELVKFL AKS +VR+
Sbjct: 404 FLDHLLNLLRNGEISVQESALKVTSRLCSLQEEVKRIMGEAGFMPELVKFLDAKSIDVRQ 463
Query: 364 MAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEG-----NSNNQKFLISILMSLTS 200
MA+ AL ++ VP+NRK+F QDD +I+ +LQLL+ +G +S N KFLISILMSLTS
Sbjct: 464 MASVALYCLISVPRNRKKFAQDDFNISYILQLLDHEDGSNVSSDSGNTKFLISILMSLTS 523
Query: 199 CNSGKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLSGIWHS 47
CNS ++KI SSGY ++IE+LAE E SDA++LV+KL+ NRFRS+LSGIWHS
Sbjct: 524 CNSARRKIASSGYLKSIEKLAETE-GSDAKKLVKKLSMNRFRSILSGIWHS 573
>ref|NP_182096.1| unknown protein; protein id: At2g45720.1 [Arabidopsis thaliana]
gi|7485635|pir||T02475 hypothetical protein At2g45720
[imported] - Arabidopsis thaliana
gi|3386623|gb|AAC28553.1| unknown protein [Arabidopsis
thaliana] gi|20197052|gb|AAM14897.1| unknown protein
[Arabidopsis thaliana]
Length = 553
Score = 93.2 bits (230), Expect = 2e-18
Identities = 51/163 (31%), Positives = 99/163 (60%)
Frame = -1
Query: 550 YGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAKSFEV 371
+ + L++ +++G + Q+ A R+ TS E K+ +G++G + L++ L AK+
Sbjct: 392 FKIIPSLVHVLKSGSIGAQQAAASTICRIA-TSNETKRMIGESGCIPLLIRMLEAKASGA 450
Query: 370 REMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNQKFLISILMSLTSCNS 191
RE+AA+A++ +V VP+N + +D++S+ L+ LLEP+ GNS +K+ +S L +L S
Sbjct: 451 REVAAQAIASLVTVPRNCREVKRDEKSVTSLVMLLEPSPGNS-AKKYAVSGLAALCSSRK 509
Query: 190 GKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLS 62
KK +VS G +++L+E EV +++L+ ++ + +S S
Sbjct: 510 CKKLMVSHGAVGYLKKLSELEVPG-SKKLLERIEKGKLKSFFS 551
>gb|AAM92297.1| putative arm repeat containing protein [Oryza sativa (japonica
cultivar-group)] gi|27311271|gb|AAO00697.1| putative
armadillo repeat containing protein [Oryza sativa
(japonica cultivar-group)]
Length = 575
Score = 90.1 bits (222), Expect = 2e-17
Identities = 54/166 (32%), Positives = 102/166 (60%)
Frame = -1
Query: 559 LITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAKS 380
L++ G + +L++ +R G V Q+ A R+ +S E K+ +G+ G M LV+ L AKS
Sbjct: 411 LVSLGVLPRLVHVLREGSVGAQQAAAAAICRV-SSSSEMKRLVGEHGCMPLLVRLLEAKS 469
Query: 379 FEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNQKFLISILMSLTS 200
RE+AA+A++ ++ N + +D++S+ L+QLLEP+ N+ +K+ IS L++L++
Sbjct: 470 NGAREVAAQAVASLMSCLANARDIKKDEKSVPNLVQLLEPSPQNT-AKKYAISCLLTLSA 528
Query: 199 CNSGKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLS 62
KK ++S G +++L+E +V+ A++L+ KL + R++ S
Sbjct: 529 SKRCKKLMISHGAIGYLKKLSEMDVAG-AKKLLEKLERGKLRNLFS 573
Score = 33.1 bits (74), Expect = 2.4
Identities = 33/134 (24%), Positives = 65/134 (47%), Gaps = 1/134 (0%)
Frame = -1
Query: 562 ILITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAK 383
+L++ G + L+ V +G + +E A+ RL + + A+ +G +G + T
Sbjct: 246 LLVSEGALPPLIRLVESGSLVGREKAVITLQRLSMSPDIARAIVGHSGVRPLIDICQTGD 305
Query: 382 SFEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNQKFLISILMSLT 203
S + AA AL + VP+ R+ ++ + +++ LL+ +++ L SLT
Sbjct: 306 SIS-QSAAAGALKNLSAVPEVRQALAEEG-IVRVMVNLLDCGVV-LGCKEYAAECLQSLT 362
Query: 202 SCNSG-KKKIVSSG 164
S N G ++ +VS G
Sbjct: 363 SSNDGLRRAVVSEG 376
>ref|NP_199903.1| putative protein; protein id: At5g50900.1, supported by cDNA:
gi_14532769 [Arabidopsis thaliana]
gi|9758237|dbj|BAB08736.1|
gene_id:K3K7.4~pir||T02475~similar to unknown protein
[Arabidopsis thaliana]
Length = 555
Score = 79.0 bits (193), Expect = 4e-14
Identities = 45/170 (26%), Positives = 99/170 (57%)
Frame = -1
Query: 562 ILITYGFVDQLLYYVRNGEVSIQELALKVAIRLCGTSEEAKKALGDAGFMAELVKFLTAK 383
++I+ GF+ +L+ + G + ++ +A A+ G S +++K +G++G + L+ L K
Sbjct: 390 VVISEGFIPRLVPVLSCGVLGVR-IAAAEAVSSLGFSSKSRKEMGESGCIVPLIDMLDGK 448
Query: 382 SFEVREMAAEALSGMVMVPKNRKRFVQDDQSIALLLQLLEPNEGNSNNQKFLISILMSLT 203
+ E +E A++ALS +++ NRK F + D+ + L+QLL+P + ++++ +S L L
Sbjct: 449 AIEEKEAASKALSTLLVCTSNRKIFKKSDKGVVSLVQLLDP-KIKKLDKRYTVSALELLV 507
Query: 202 SCNSGKKKIVSSGYAQNIERLAEAEVSSDAQRLVRKLATNRFRSMLSGIW 53
+ +K++V++G ++++L + + +KLA N RS + G++
Sbjct: 508 TSKKCRKQVVAAGACLHLQKLVDMDTEG-----AKKLAENLSRSKIWGVF 552
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,898,634
Number of Sequences: 1393205
Number of extensions: 9995187
Number of successful extensions: 26245
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 25320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26222
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
