Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018839A_C01 KMC018839A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42655.1| unknown protein [Arabidopsis thaliana] 239 2e-62
dbj|BAC43193.1| unknown protein [Arabidopsis thaliana] 238 3e-62
emb|CAC81898.1| NEP1-interacting protein 2 [Arabidopsis thaliana] 238 3e-62
emb|CAC81897.1| NEP1-interacting protein [Arabidopsis thaliana] 230 9e-60
pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thal... 228 4e-59
>dbj|BAC42655.1| unknown protein [Arabidopsis thaliana]
Length = 236
Score = 239 bits (610), Expect = 2e-62
Identities = 116/152 (76%), Positives = 133/152 (87%), Gaps = 1/152 (0%)
Frame = -3
Query: 608 AVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAV 429
AVFSIEVFESS VLW+S+ES F CLLYLIDVI SL+SGRLVRERIGPAM SAVQSQMGAV
Sbjct: 85 AVFSIEVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAV 144
Query: 428 ESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITG-NNGDASGQRDSCSVCLQDFQLGETV 252
+S F+E+ ++FD G +KGL+G V KIP++ ITG NN DASG +DSCSVCLQDFQLGETV
Sbjct: 145 DSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETV 204
Query: 251 RSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 156
RSLP+CHHMFHLPCID WL +H SCP+CRRD+
Sbjct: 205 RSLPHCHHMFHLPCIDNWLFRHGSCPMCRRDL 236
>dbj|BAC43193.1| unknown protein [Arabidopsis thaliana]
Length = 241
Score = 238 bits (608), Expect = 3e-62
Identities = 117/152 (76%), Positives = 130/152 (84%), Gaps = 1/152 (0%)
Frame = -3
Query: 608 AVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAV 429
AVFSIEVFESS LW+SDESGF C LYLIDVI SLLSGRLVRERIGPAM SAVQSQMGAV
Sbjct: 90 AVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAV 149
Query: 428 ESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITGNNG-DASGQRDSCSVCLQDFQLGETV 252
++ FD+ +LFD G +KGL+G V KIP++TITGNN DAS DSCSVCLQDFQLGETV
Sbjct: 150 DTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETV 209
Query: 251 RSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 156
RSLP+CHHMFHLPCID WL +H SCP+CRRD+
Sbjct: 210 RSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>emb|CAC81898.1| NEP1-interacting protein 2 [Arabidopsis thaliana]
Length = 241
Score = 238 bits (608), Expect = 3e-62
Identities = 117/152 (76%), Positives = 130/152 (84%), Gaps = 1/152 (0%)
Frame = -3
Query: 608 AVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAV 429
AVFSIEVFESS LW+SDESGF C LYLIDVI SLLSGRLVRERIGPAM SAVQSQMGAV
Sbjct: 90 AVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAV 149
Query: 428 ESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITGNNG-DASGQRDSCSVCLQDFQLGETV 252
++ FD+ +LFD G +KGL+G V KIP++TITGNN DAS DSCSVCLQDFQLGETV
Sbjct: 150 DTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETV 209
Query: 251 RSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 156
RSLP+CHHMFHLPCID WL +H SCP+CRRD+
Sbjct: 210 RSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
>emb|CAC81897.1| NEP1-interacting protein [Arabidopsis thaliana]
Length = 236
Score = 230 bits (587), Expect = 9e-60
Identities = 113/152 (74%), Positives = 130/152 (85%), Gaps = 1/152 (0%)
Frame = -3
Query: 608 AVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAV 429
AVFSIEVFESS VLW+S+ES F CLLYLIDVI SL+SGRLVRERIGPAM SAVQSQMGAV
Sbjct: 85 AVFSIEVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAV 144
Query: 428 ESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITG-NNGDASGQRDSCSVCLQDFQLGETV 252
+S F+E+ ++FD G +KGL+G V KIP++ ITG NN DA G +DSCS CLQDFQLGETV
Sbjct: 145 DSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDAFGNKDSCSGCLQDFQLGETV 204
Query: 251 RSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM 156
RSLP+CH MFHLPCID WL +H SCP+CRRD+
Sbjct: 205 RSLPHCHPMFHLPCIDNWLFRHGSCPMCRRDL 236
>pir||T08862 hypothetical protein A_TM017A05.9 - Arabidopsis thaliana
Length = 292
Score = 228 bits (582), Expect = 4e-59
Identities = 113/147 (76%), Positives = 125/147 (84%), Gaps = 1/147 (0%)
Frame = -3
Query: 608 AVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAV 429
AVFSIEVFESS LW+SDESGF C LYLIDVI SLLSGRLVRERIGPAM SAVQSQMGAV
Sbjct: 103 AVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAV 162
Query: 428 ESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITGNNG-DASGQRDSCSVCLQDFQLGETV 252
++ FD+ +LFD G +KGL+G V KIP++TITGNN DAS DSCSVCLQDFQLGETV
Sbjct: 163 DTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETV 222
Query: 251 RSLPYCHHMFHLPCIDEWLSKHVSCPL 171
RSLP+CHHMFHLPCID WL +H SCP+
Sbjct: 223 RSLPHCHHMFHLPCIDNWLLRHGSCPI 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,903,133
Number of Sequences: 1393205
Number of extensions: 11556086
Number of successful extensions: 27685
Number of sequences better than 10.0: 1093
Number of HSP's better than 10.0 without gapping: 26463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27351
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
