Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018816A_C01 KMC018816A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564328.1| Expressed protein; protein id: At1g29395.1, sup... 154 7e-37
ref|NP_564327.1| expressed protein; protein id: At1g29390.1, sup... 152 2e-36
gb|AAM67541.1| unknown protein [Arabidopsis thaliana] 152 2e-36
gb|AAL87293.1| unknown protein [Arabidopsis thaliana] 152 2e-36
pir||E86416 unknown protein, 31966-27882 [imported] - Arabidopsi... 152 3e-36
>ref|NP_564328.1| Expressed protein; protein id: At1g29395.1, supported by cDNA:
30602., supported by cDNA: gi_15028238 [Arabidopsis
thaliana] gi|15028239|gb|AAK76616.1| unknown protein
[Arabidopsis thaliana] gi|21592634|gb|AAM64583.1|
unknown [Arabidopsis thaliana]
gi|22136822|gb|AAM91755.1| unknown protein [Arabidopsis
thaliana] gi|26452616|dbj|BAC43391.1| unknown protein
[Arabidopsis thaliana]
Length = 225
Score = 154 bits (389), Expect = 7e-37
Identities = 74/116 (63%), Positives = 98/116 (83%), Gaps = 1/116 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFAL AP+ +AWIKG YG+WAAFLAL+ RLFF PGELELPF+ALLLVIVAPY+ M
Sbjct: 110 VPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMN 169
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 216
R +EGA I++ I+ +LA+QHFSR SL+K++++GSV+AT+A+I +T+VSL+L+L
Sbjct: 170 IRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLLL 225
>ref|NP_564327.1| expressed protein; protein id: At1g29390.1, supported by cDNA:
42692. [Arabidopsis thaliana]
Length = 226
Score = 152 bits (385), Expect = 2e-36
Identities = 74/116 (63%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFALQAP G ++W+KG YG+WAAFLALL RLFF P ELELPF+ALLLVIVAPY+ M
Sbjct: 111 VPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMS 170
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 216
R +EGA +SL I+ +LA+QHFSR +LQK+FDQ SV+AT+A+I +T+VS + ++
Sbjct: 171 IRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226
>gb|AAM67541.1| unknown protein [Arabidopsis thaliana]
Length = 147
Score = 152 bits (385), Expect = 2e-36
Identities = 74/116 (63%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFALQAP G ++W+KG YG+WAAFLALL RLFF P ELELPF+ALLLVIVAPY+ M
Sbjct: 32 VPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMS 91
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 216
R +EGA +SL I+ +LA+QHFSR +LQK+FDQ SV+AT+A+I +T+VS + ++
Sbjct: 92 IRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 147
>gb|AAL87293.1| unknown protein [Arabidopsis thaliana]
Length = 219
Score = 152 bits (385), Expect = 2e-36
Identities = 74/116 (63%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFALQAP G ++W+KG YG+WAAFLALL RLFF P ELELPF+ALLLVIVAPY+ M
Sbjct: 104 VPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMS 163
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL 216
R +EGA +SL I+ +LA+QHFSR +LQK+FDQ SV+AT+A+I +T+VS + ++
Sbjct: 164 IRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 219
>pir||E86416 unknown protein, 31966-27882 [imported] - Arabidopsis thaliana
gi|12323527|gb|AAG51739.1|AC068667_18 unknown protein;
31966-27882 [Arabidopsis thaliana]
Length = 484
Score = 152 bits (384), Expect = 3e-36
Identities = 77/120 (64%), Positives = 96/120 (79%), Gaps = 1/120 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFALQAP G ++W+KG YG+WAAFLALL RLFF P ELELPF+ALLLVIVAPY+ M
Sbjct: 312 VPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMS 371
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITLVSLMLVL*AGV 204
R +EGA +SL I+ +LA+QHFSR +LQK+FDQ SV+AT+A+I +T+VS L + GV
Sbjct: 372 IRGKQEGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSWSLSVIFGV 431
Score = 145 bits (366), Expect = 3e-34
Identities = 69/109 (63%), Positives = 91/109 (83%), Gaps = 1/109 (0%)
Frame = -1
Query: 560 VPLFALQAPAGFIAWIKGSYGMWAAFLALLVRLFFYIPGELELPFLALLLVIVAPYEAMK 381
VPLFAL AP+ +AWIKG YG+WAAFLAL+ RLFF PGELELPF+ALLLVIVAPY+ M
Sbjct: 110 VPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMN 169
Query: 380 FRDTKEGAFISLLIAVYLAYQHFSRT-SLQKSFDQGSVVATLAVICITL 237
R +EGA I++ I+ +LA+QHFSR SL+K++++GSV+AT+A+I +T+
Sbjct: 170 IRGKQEGAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTV 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,662,261
Number of Sequences: 1393205
Number of extensions: 8532319
Number of successful extensions: 27330
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 26666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27299
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
