Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018781A_C01 KMC018781A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_326024.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25392478|p... 35 0.63
ref|XP_220231.1| similar to hypothetical protein FLJ31364 [Homo ... 33 2.4
ref|NP_742045.1| Usher syndrome 2A (autosomal recessive, mild) [... 32 3.1
pir||T33637 hypothetical protein H09G03.2 - Caenorhabditis elegans 31 7.0
gb|AAF31676.1|AF178679_3 NADH dehydrogenase subunit 2 [Galatheal... 31 9.1
>ref|NP_326024.1| LIPOPROTEIN [Mycoplasma pulmonis] gi|25392478|pir||A90536
lipoprotein [imported] - Mycoplasma pulmonis (strain UAB
CTIP) gi|14089606|emb|CAC13366.1| LIPOPROTEIN
[Mycoplasma pulmonis]
Length = 323
Score = 34.7 bits (78), Expect = 0.63
Identities = 30/95 (31%), Positives = 41/95 (42%), Gaps = 3/95 (3%)
Frame = -3
Query: 467 ESH*CMVGAAFN*REEKYYDIF*YTQRGEVNFKEGNKLINESK---EWIEALFH*PLFMI 297
ES ++ AF E K D + + NF E K I+ K E E+LF+ L
Sbjct: 58 ESINTLLNTAFYNEETKQVD-----EHEKQNFIEEQKAIDTQKYLQEIRESLFYSNLIQT 112
Query: 296 NGFCLLVIASASFLWHRLKPPCGRIKDASDKNWSW 192
N F L + H +K +IKD + KNW W
Sbjct: 113 NSFILSFFGTPI---HSVKNSREKIKDLTSKNWLW 144
>ref|XP_220231.1| similar to hypothetical protein FLJ31364 [Homo sapiens] [Rattus
norvegicus]
Length = 414
Score = 32.7 bits (73), Expect = 2.4
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -3
Query: 284 LLVIASASFLWHRLKPP-CGRIKDASDKNWSWSSSE*PRARWVISMSRLMSTDARH*LLA 108
L VI ++LW+ L+P G K +S K W SE +AR IS S + L
Sbjct: 206 LAVIGLDAYLWYHLQPQRGGSCKPSSQKTWPPKKSEEAQARVAISWSEVEEA------LV 259
Query: 107 FVGLTSEMDDLFIVNY 60
+ L + +D L + ++
Sbjct: 260 LLQLHANLDVLLVASW 275
>ref|NP_742045.1| Usher syndrome 2A (autosomal recessive, mild) [Rattus norvegicus]
gi|22212216|gb|AAL78289.1| usherin [Rattus norvegicus]
Length = 1512
Score = 32.3 bits (72), Expect = 3.1
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 5/45 (11%)
Frame = -3
Query: 239 PPCGRIKDASDKNWSWSSSE*PRARWVI-----SMSRLMSTDARH 120
PP GR++ +S N SWS + P A W+ S + +TD +H
Sbjct: 1055 PPRGRVQSSSAINLSWSPPDFPNAHWLTYTLFRDDSEIYTTDDQH 1099
>pir||T33637 hypothetical protein H09G03.2 - Caenorhabditis elegans
Length = 691
Score = 31.2 bits (69), Expect = 7.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 390 LSISKNVIVFFFSLIKCCSYHTLMRLY-KLA 479
L ISKN + FFF ++K +HTL ++ KLA
Sbjct: 659 LRISKNFVNFFFRILKIPGFHTLFEIFSKLA 689
>gb|AAF31676.1|AF178679_3 NADH dehydrogenase subunit 2 [Galathealinum brachiosum]
Length = 333
Score = 30.8 bits (68), Expect = 9.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 324 SLYPFFTLIYELVSLFKIHFTSLSISKNVIVFF 422
+LY + LI+ L++ F F + ++KN I FF
Sbjct: 286 NLYYYLVLIFPLMNFFNFKFMKIKLNKNFIFFF 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,482,222
Number of Sequences: 1393205
Number of extensions: 7966749
Number of successful extensions: 24670
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24657
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
