Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018738A_C01 KMC018738A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65899.1| pollen allergen-like protein [Arabidopsis thaliana] 124 8e-28
gb|AAF87152.1|AC002423_17 T23E23.17 [Arabidopsis thaliana] 124 1e-27
ref|NP_173813.1| Bet v I allergen family; protein id: At1g24020.... 124 1e-27
emb|CAB85634.1| putative ripening-related protein [Vitis vinifera] 67 2e-10
ref|NP_177241.2| Csf-2-related; protein id: At1g70840.1 [Arabido... 67 2e-10
>gb|AAM65899.1| pollen allergen-like protein [Arabidopsis thaliana]
Length = 155
Score = 124 bits (311), Expect = 8e-28
Identities = 58/95 (61%), Positives = 76/95 (79%)
Frame = -3
Query: 562 ITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISVIAVGEGSEVKW 383
ITY EGSPLVK S E+I+A D E K++SY++I GE+L+YY+ FKGTI+VI GS +KW
Sbjct: 58 ITYGEGSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKNGGSLLKW 117
Query: 382 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQ 278
S E+EK + +I DP V+KDFAVKNF E+DEY+L+Q
Sbjct: 118 SGEFEKTAHEIDDPHVIKDFAVKNFKEIDEYLLKQ 152
>gb|AAF87152.1|AC002423_17 T23E23.17 [Arabidopsis thaliana]
Length = 418
Score = 124 bits (310), Expect = 1e-27
Identities = 58/95 (61%), Positives = 76/95 (79%)
Frame = -3
Query: 562 ITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISVIAVGEGSEVKW 383
ITY EGSPLVK S E+I+A D E K++SY++I GE+L+YY+ FKGTI+VI GS +KW
Sbjct: 58 ITYGEGSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKW 117
Query: 382 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQ 278
S E+EK + +I DP V+KDFAVKNF E+DEY+L+Q
Sbjct: 118 SGEFEKTAHEIDDPHVIKDFAVKNFKEIDEYLLKQ 152
Score = 65.5 bits (158), Expect = 4e-10
Identities = 34/88 (38%), Positives = 54/88 (60%), Gaps = 2/88 (2%)
Frame = -3
Query: 541 PLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISV--IAVGEGSEVKWSAEYE 368
P K+ +I+A D KKT++ + E+ +Y++ KG+I+V I VG+GS V W+ +E
Sbjct: 327 PFEKNGKTEIEAVDLVKKTMTIQMSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWTFHFE 386
Query: 367 KASTDIPDPSVVKDFAVKNFLEVDEYVL 284
K DI DP + D +VK F ++DE +L
Sbjct: 387 KVHKDIDDPHSIIDESVKYFKKLDEAIL 414
Score = 38.1 bits (87), Expect = 0.077
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Frame = -3
Query: 538 LVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISV------------------- 416
L ++ T +I+ EKK ++ + ++ ++Y+ FKGTI+
Sbjct: 150 LKQTITVEIEEVPLEKKKTTFRIEGFQISEWYKSFKGTITPDMATWQNPDGYKKLEGTMT 209
Query: 415 ---IAVGEGSEVKWSAEYEKASTDIPDPSVVKDFAVKNFLEVDE 293
+ + + +YEK ++DI DP + D V+ F E+DE
Sbjct: 210 ITHVEDNDCDRAILTVKYEKINSDIKDPGTIMDTFVEFFKEMDE 253
>ref|NP_173813.1| Bet v I allergen family; protein id: At1g24020.1, supported by
cDNA: 6145., supported by cDNA: gi_15450352, supported
by cDNA: gi_16974470 [Arabidopsis thaliana]
gi|15450353|gb|AAK96470.1| At1g24020/T23E23_22
[Arabidopsis thaliana] gi|16197682|emb|CAC83600.1| major
latex-like protein [Arabidopsis thaliana]
gi|16974471|gb|AAL31239.1| At1g24020/T23E23_22
[Arabidopsis thaliana]
Length = 155
Score = 124 bits (310), Expect = 1e-27
Identities = 58/95 (61%), Positives = 76/95 (79%)
Frame = -3
Query: 562 ITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISVIAVGEGSEVKW 383
ITY EGSPLVK S E+I+A D E K++SY++I GE+L+YY+ FKGTI+VI GS +KW
Sbjct: 58 ITYGEGSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPKDGGSLLKW 117
Query: 382 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQ 278
S E+EK + +I DP V+KDFAVKNF E+DEY+L+Q
Sbjct: 118 SGEFEKTAHEIDDPHVIKDFAVKNFKEIDEYLLKQ 152
>emb|CAB85634.1| putative ripening-related protein [Vitis vinifera]
Length = 151
Score = 67.0 bits (162), Expect = 2e-10
Identities = 33/93 (35%), Positives = 56/93 (59%)
Frame = -3
Query: 562 ITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISVIAVGEGSEVKW 383
+T E S +K E +D D+E +++++ V+DGE+L+ Y+ +K T I GEG V W
Sbjct: 60 LTVGENSESIK---ETVDQIDEENRSITFKVLDGEVLKDYKSYKFTTQAIPKGEGCLVIW 116
Query: 382 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVL 284
+ EYEKAS PDP +F+V +++ +++
Sbjct: 117 TIEYEKASEGGPDPHNCLEFSVNITKDIESHLV 149
>ref|NP_177241.2| Csf-2-related; protein id: At1g70840.1 [Arabidopsis thaliana]
Length = 172
Score = 66.6 bits (161), Expect = 2e-10
Identities = 35/95 (36%), Positives = 52/95 (53%), Gaps = 2/95 (2%)
Frame = -3
Query: 556 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYQKFKGTISVIAV--GEGSEVKW 383
Y G K + E+I+A + EK +++ VI+G+LL+ Y+ F TI V G GS V W
Sbjct: 77 YVHGKCKAKVAKERIEAVEPEKNLITFRVIEGDLLKEYKSFVITIQVTPKRGGPGSVVHW 136
Query: 382 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQ 278
EYEK + P DF V+ E+DE++L +
Sbjct: 137 HVEYEKIDDKVAHPETFLDFCVEVSKEIDEHLLNE 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,340,107
Number of Sequences: 1393205
Number of extensions: 9582692
Number of successful extensions: 25243
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 24125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25153
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
