Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018676A_C01 KMC018676A_c01
(438 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179394.1| putative peptide methionine sulfoxide reductase... 47 4e-05
ref|NP_693015.1| hypothetical protein [Oceanobacillus iheyensis ... 33 0.62
>ref|NP_179394.1| putative peptide methionine sulfoxide reductase; protein id:
At2g18030.1 [Arabidopsis thaliana]
gi|25411824|pir||D84559 probable peptide methionine
sulfoxide reductase [imported] - Arabidopsis thaliana
gi|4406815|gb|AAD20123.1| putative peptide methionine
sulfoxide reductase [Arabidopsis thaliana]
gi|27765030|gb|AAO23636.1| At2g18030 [Arabidopsis
thaliana]
Length = 254
Score = 47.4 bits (111), Expect = 4e-05
Identities = 17/25 (68%), Positives = 24/25 (96%)
Frame = -2
Query: 437 PNIQKHIDAKINEIIKKGWPILREL 363
P IQKHID+++NEII+KGWP+LR++
Sbjct: 230 PRIQKHIDSRVNEIIRKGWPVLRDI 254
>ref|NP_693015.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22777779|dbj|BAC14050.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 250
Score = 33.5 bits (75), Expect = 0.62
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 4/56 (7%)
Frame = +1
Query: 262 LPTGTNY*TNLIET----EVSHIS*KNDNLNNFTKVSYNSLKMGQPFFIISLIFAS 417
+P GT+ NL+ T + +IS ND ++ + K SYN LK + I ++FAS
Sbjct: 56 IPNGTDVLINLLSTGNVGRLVNISEMNDMVDVYFKASYNILKAAEELNIPKVVFAS 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,990,927
Number of Sequences: 1393205
Number of extensions: 6320002
Number of successful extensions: 10295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10294
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
