Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018664A_C01 KMC018664A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG01340.1|AF288615_1 4-diphosphocytidyl-2C-methyl-D-erythrit... 214 8e-55
ref|NP_180261.1| putative ripening-associated protein; protein i... 213 1e-54
sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythritol ... 207 9e-53
sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol ... 207 9e-53
gb|AAF76143.1|AF258339_1 4-diphosphocytidyl-2C-methyl-D-erythrit... 207 9e-53
>gb|AAG01340.1|AF288615_1 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Arabidopsis
thaliana]
Length = 383
Score = 214 bits (544), Expect = 8e-55
Identities = 97/127 (76%), Positives = 117/127 (91%)
Frame = -3
Query: 559 ACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRI 380
ACSTAEVYKRLRLDQTSN++P TLL+ ++ NG+SQ +C+NDLEPPAF VLPSLKRLKQRI
Sbjct: 247 ACSTAEVYKRLRLDQTSNINPLTLLKNVTSNGVSQSICVNDLEPPAFSVLPSLKRLKQRI 306
Query: 379 TAAGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREP 200
A+GRG+YDAVFMSGSGSTI+GIGSPDPPQF+YDD+EY+DVFLS+A F+TRE N+WY+EP
Sbjct: 307 IASGRGEYDAVFMSGSGSTIIGIGSPDPPQFIYDDEEYKDVFLSEANFMTREANEWYKEP 366
Query: 199 ASSPAAS 179
AS+ A +
Sbjct: 367 ASANATT 373
>ref|NP_180261.1| putative ripening-associated protein; protein id: At2g26930.1,
supported by cDNA: gi_12697584, supported by cDNA:
gi_9864190 [Arabidopsis thaliana]
gi|7387807|sp|O81014|ISPE_ARATH
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,
chloroplast precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (CDPMEK) gi|7488313|pir||T02642 probable
ripening-associated protein [imported] - Arabidopsis
thaliana gi|3426035|gb|AAC32234.1| putative
ripening-associated protein [Arabidopsis thaliana]
gi|12697585|dbj|BAB21593.1| 4-(cytidine
5'-phospho)-2-C-methyl-D-erithritol kinase [Arabidopsis
thaliana] gi|22531112|gb|AAM97060.1| putative
ripening-associated protein [Arabidopsis thaliana]
gi|23198000|gb|AAN15527.1| putative ripening-associated
protein [Arabidopsis thaliana]
Length = 383
Score = 213 bits (543), Expect = 1e-54
Identities = 97/127 (76%), Positives = 117/127 (91%)
Frame = -3
Query: 559 ACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRI 380
ACSTAEVYKRLRLDQTSN++P TLLE ++ NG+SQ +C+NDLEPPAF VLPSLKRLKQRI
Sbjct: 247 ACSTAEVYKRLRLDQTSNINPLTLLENVTSNGVSQSICVNDLEPPAFSVLPSLKRLKQRI 306
Query: 379 TAAGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREP 200
A+GRG+YDAVFMSGSGSTI+GIGSPDPPQF+YDD+EY++VFLS+A F+TRE N+WY+EP
Sbjct: 307 IASGRGEYDAVFMSGSGSTIIGIGSPDPPQFIYDDEEYKNVFLSEANFMTREANEWYKEP 366
Query: 199 ASSPAAS 179
AS+ A +
Sbjct: 367 ASANATT 373
>sp|P93841|ISPE_LYCES 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) (Ripening-associated protein pTOM41)
gi|7489069|pir||T07419 ripening-associated protein,
chromoplast - tomato (fragment)
gi|1899050|gb|AAB49936.1| ripening-associated protein
[Lycopersicon esculentum]
gi|9454221|gb|AAF87717.1|AF263101_1
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
[Lycopersicon esculentum]
Length = 401
Score = 207 bits (526), Expect = 9e-53
Identities = 98/122 (80%), Positives = 111/122 (90%)
Frame = -3
Query: 559 ACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRI 380
ACSTAEVYKR +LD +S VDP +LLEKIS +GISQDVC+NDLEPPAFEVLPSLKRLKQR+
Sbjct: 263 ACSTAEVYKRFQLDLSSKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLPSLKRLKQRV 322
Query: 379 TAAGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREP 200
AAGRG+YDAVFMSGSGSTIVG+GSPDPPQFVYDD+EY+DVFLS+A F+TR N+WY EP
Sbjct: 323 IAAGRGQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEEYKDVFLSEASFITRPANEWYVEP 382
Query: 199 AS 194
S
Sbjct: 383 VS 384
>sp|P56848|ISPE_MENPI 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast
precursor (CMK)
(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
kinase) gi|6478464|gb|AAF13866.1|AF179283_1 isopentenyl
monophosphate kinase [Mentha x piperita]
gi|6688843|emb|CAB65292.1| isopentenyl monophosphate
kinase [Mentha x piperita]
Length = 405
Score = 207 bits (526), Expect = 9e-53
Identities = 97/129 (75%), Positives = 111/129 (85%)
Frame = -3
Query: 559 ACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRI 380
AC T EVYKRLRLDQTS++DP LLEKIS+ GISQDVC+NDLEPPAFEV+PSLKRLKQRI
Sbjct: 272 ACPTGEVYKRLRLDQTSDIDPLVLLEKISKGGISQDVCVNDLEPPAFEVVPSLKRLKQRI 331
Query: 379 TAAGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREP 200
AAGR +YDAVFMSGSGSTIVG+GSPDPPQFVYD DEY+++F S+A F+TR NQWY EP
Sbjct: 332 AAAGRSQYDAVFMSGSGSTIVGVGSPDPPQFVYDGDEYKNIFFSEAKFITRSANQWYSEP 391
Query: 199 ASSPAASPF 173
S+ + F
Sbjct: 392 LSTDESPSF 400
>gb|AAF76143.1|AF258339_1 4-diphosphocytidyl-2C-methyl-D-erythritol kinase [Expression vector
pNCO-HIS6-TM-YCHB]
Length = 331
Score = 207 bits (526), Expect = 9e-53
Identities = 98/122 (80%), Positives = 111/122 (90%)
Frame = -3
Query: 559 ACSTAEVYKRLRLDQTSNVDPSTLLEKISRNGISQDVCINDLEPPAFEVLPSLKRLKQRI 380
ACSTAEVYKR +LD +S VDP +LLEKIS +GISQDVC+NDLEPPAFEVLPSLKRLKQR+
Sbjct: 193 ACSTAEVYKRFQLDLSSKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLPSLKRLKQRV 252
Query: 379 TAAGRGKYDAVFMSGSGSTIVGIGSPDPPQFVYDDDEYQDVFLSDAYFLTREPNQWYREP 200
AAGRG+YDAVFMSGSGSTIVG+GSPDPPQFVYDD+EY+DVFLS+A F+TR N+WY EP
Sbjct: 253 IAAGRGQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEEYKDVFLSEASFITRPANEWYVEP 312
Query: 199 AS 194
S
Sbjct: 313 VS 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,248,702
Number of Sequences: 1393205
Number of extensions: 9414927
Number of successful extensions: 22497
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 21708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22473
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
