Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018652A_C01 KMC018652A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42364.1| unknown protein [Arabidopsis thaliana] gi|289730... 94 2e-18
dbj|BAB27765.1| unnamed protein product [Mus musculus] 48 8e-05
ref|XP_130984.1| RIKEN cDNA 2610034E18 [Mus musculus] gi|2038071... 48 8e-05
ref|NP_115493.1| GAJ protein; homolog of yeast MND1 [Homo sapien... 47 1e-04
ref|XP_215595.1| similar to RIKEN cDNA 2610034E18 [Mus musculus]... 46 3e-04
>dbj|BAC42364.1| unknown protein [Arabidopsis thaliana] gi|28973061|gb|AAO63855.1|
unknown protein [Arabidopsis thaliana]
Length = 230
Score = 93.6 bits (231), Expect = 2e-18
Identities = 40/50 (80%), Positives = 46/50 (92%)
Frame = -2
Query: 569 VAHASANRWTDNIFTLKXWCTNNFPQAKEQLENLYKEVGITDDFDYLELA 420
VAH SANRWTDNIFTL+ WC+NNFPQAKEQLE+LY E GIT+DFDY+EL+
Sbjct: 160 VAHQSANRWTDNIFTLRQWCSNNFPQAKEQLEHLYTEAGITEDFDYIELS 209
>dbj|BAB27765.1| unnamed protein product [Mus musculus]
Length = 205
Score = 48.1 bits (113), Expect = 8e-05
Identities = 21/48 (43%), Positives = 30/48 (61%)
Frame = -2
Query: 569 VAHASANRWTDNIFTLKXWCTNNFPQAKEQLENLYKEVGITDDFDYLE 426
VA +ANRWTDNIF +K W F + +++ K GI +DFDY++
Sbjct: 161 VAKEAANRWTDNIFAIKSWAKRKFGFEESKID---KNFGIPEDFDYID 205
>ref|XP_130984.1| RIKEN cDNA 2610034E18 [Mus musculus] gi|20380711|gb|AAH27741.1|
RIKEN cDNA 2610034E18 gene [Mus musculus]
Length = 205
Score = 48.1 bits (113), Expect = 8e-05
Identities = 21/48 (43%), Positives = 30/48 (61%)
Frame = -2
Query: 569 VAHASANRWTDNIFTLKXWCTNNFPQAKEQLENLYKEVGITDDFDYLE 426
VA +ANRWTDNIF +K W F + +++ K GI +DFDY++
Sbjct: 161 VAKEAANRWTDNIFAIKSWAKRKFGFEESKID---KNFGIPEDFDYID 205
>ref|NP_115493.1| GAJ protein; homolog of yeast MND1 [Homo sapiens]
gi|13488609|gb|AAK26168.1| GAJ [Homo sapiens]
gi|21594676|gb|AAH32142.1| GAJ protein [Homo sapiens]
Length = 205
Score = 47.4 bits (111), Expect = 1e-04
Identities = 20/48 (41%), Positives = 30/48 (61%)
Frame = -2
Query: 569 VAHASANRWTDNIFTLKXWCTNNFPQAKEQLENLYKEVGITDDFDYLE 426
VA +ANRWTDNIF +K W F + +++ + GI +DFDY++
Sbjct: 161 VAKEAANRWTDNIFAIKSWAKRKFGFEENKIDRTF---GIPEDFDYID 205
>ref|XP_215595.1| similar to RIKEN cDNA 2610034E18 [Mus musculus] [Rattus norvegicus]
Length = 147
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/48 (41%), Positives = 30/48 (61%)
Frame = -2
Query: 569 VAHASANRWTDNIFTLKXWCTNNFPQAKEQLENLYKEVGITDDFDYLE 426
VA +ANRWTDNIF +K W + + +++ K GI +DFDY++
Sbjct: 103 VAKEAANRWTDNIFAIKSWAKRKYGFEETKID---KNFGIPEDFDYVD 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,211,628
Number of Sequences: 1393205
Number of extensions: 7878465
Number of successful extensions: 18422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 17956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18410
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
