Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018550A_C01 KMC018550A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43140.1| unknown protein [Arabidopsis thaliana] gi|283728... 62 5e-09
ref|NP_180234.1| unknown protein; protein id: At2g26660.1 [Arabi... 62 5e-09
gb|AAL17697.1| IDS-4-like protein [Castanea sativa] 60 2e-08
ref|NP_197515.1| ids4-like protein; protein id: At5g20150.1, sup... 49 6e-05
gb|AAM64762.1| ids4-like protein [Arabidopsis thaliana] 49 6e-05
>dbj|BAC43140.1| unknown protein [Arabidopsis thaliana] gi|28372868|gb|AAO39916.1|
At2g26660 [Arabidopsis thaliana]
Length = 161
Score = 62.0 bits (149), Expect = 5e-09
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = -3
Query: 565 LKQVPKELAEIPNMENMFIKLTTSALDTLKEIRGGSSTVSIYSLPP 428
L +VPKEL+EI ME++++K T SAL LKEIR GSSTVS++SLPP
Sbjct: 93 LLRVPKELSEIEYMESLYMKSTVSALKVLKEIRSGSSTVSVFSLPP 138
>ref|NP_180234.1| unknown protein; protein id: At2g26660.1 [Arabidopsis thaliana]
gi|25407839|pir||C84663 hypothetical protein At2g26660
[imported] - Arabidopsis thaliana
gi|2760832|gb|AAB95300.1| unknown protein [Arabidopsis
thaliana]
Length = 287
Score = 62.0 bits (149), Expect = 5e-09
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = -3
Query: 565 LKQVPKELAEIPNMENMFIKLTTSALDTLKEIRGGSSTVSIYSLPP 428
L +VPKEL+EI ME++++K T SAL LKEIR GSSTVS++SLPP
Sbjct: 219 LLRVPKELSEIEYMESLYMKSTVSALKVLKEIRSGSSTVSVFSLPP 264
>gb|AAL17697.1| IDS-4-like protein [Castanea sativa]
Length = 224
Score = 60.1 bits (144), Expect = 2e-08
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = -3
Query: 559 QVPKELAEIPNMENMFIKLTTSALDTLKEIRGGSSTVSIYSLPP 428
+VPKELAEI ME+M++KLT SAL +KEI GSSTVS +SLPP
Sbjct: 158 KVPKELAEIEKMESMYMKLTLSALRAVKEISSGSSTVSEFSLPP 201
>ref|NP_197515.1| ids4-like protein; protein id: At5g20150.1, supported by cDNA:
32843., supported by cDNA: gi_19715594 [Arabidopsis
thaliana] gi|19715595|gb|AAL91621.1| AT5g20150/F5O24_40
[Arabidopsis thaliana] gi|23507805|gb|AAN38706.1|
At5g20150/F5O24_40 [Arabidopsis thaliana]
Length = 256
Score = 48.5 bits (114), Expect = 6e-05
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -3
Query: 556 VPKELAEIPNMENMFIKLTTSALDTLKEIRGGSSTVSIYSLPP 428
+ EL+E ME++ +K T +AL LKEIR GSSTVS++SLPP
Sbjct: 193 IQAELSEHKFMESLHMKSTIAALRVLKEIRSGSSTVSVFSLPP 235
>gb|AAM64762.1| ids4-like protein [Arabidopsis thaliana]
Length = 256
Score = 48.5 bits (114), Expect = 6e-05
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -3
Query: 556 VPKELAEIPNMENMFIKLTTSALDTLKEIRGGSSTVSIYSLPP 428
+ EL+E ME++ +K T +AL LKEIR GSSTVS++SLPP
Sbjct: 193 IQAELSEHKFMESLHMKSTIAALRVLKEIRSGSSTVSVFSLPP 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,147,129
Number of Sequences: 1393205
Number of extensions: 11213307
Number of successful extensions: 30283
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30201
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
