Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018540A_C01 KMC018540A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197072.1| hypothetical protein; protein id: At5g15680.1 [... 110 2e-23
dbj|BAC42778.1| unknown protein [Arabidopsis thaliana] 110 2e-23
sp|P14723|YWIS_WHEAT Hypothetical 16 kDa protein in middle repet... 36 0.32
ref|NP_473253.2| hypothetical protein [Plasmodium falciparum 3D7... 35 0.55
gb|ZP_00006653.1| hypothetical protein [Rhodobacter sphaeroides] 34 1.2
>ref|NP_197072.1| hypothetical protein; protein id: At5g15680.1 [Arabidopsis thaliana]
gi|11357426|pir||T51397 hypothetical protein F14F8_60 -
Arabidopsis thaliana gi|9755613|emb|CAC01767.1|
hypothetical protein [Arabidopsis thaliana]
Length = 2163
Score = 110 bits (274), Expect = 2e-23
Identities = 68/119 (57%), Positives = 80/119 (67%), Gaps = 7/119 (5%)
Frame = -2
Query: 594 SVLEALLQSCSSLTG----SHPLEPGSFENGIGGTEEKLLAPQTSFKARSGPLQYGMGSG 427
SVLEALLQSCS + G SHP + ENG T+EK L PQTSFKARSGPLQY M +
Sbjct: 2049 SVLEALLQSCSPVQGGTGGSHPQDSSYSENG---TDEKTLVPQTSFKARSGPLQYAMMAA 2105
Query: 426 LVS---VLGQGGPTEPGMSQREVTLQNTRLILGRVLDRSALGKRKDHKKLVPFVVNIGN 259
+S LG E G+ R+V LQNTRL+LGRVLD ALG R+D+++LVPFV I N
Sbjct: 2106 TMSQPFPLG-AAAAESGIPPRDVALQNTRLMLGRVLDNCALG-RRDYRRLVPFVTTIAN 2162
>dbj|BAC42778.1| unknown protein [Arabidopsis thaliana]
Length = 482
Score = 110 bits (274), Expect = 2e-23
Identities = 68/119 (57%), Positives = 80/119 (67%), Gaps = 7/119 (5%)
Frame = -2
Query: 594 SVLEALLQSCSSLTG----SHPLEPGSFENGIGGTEEKLLAPQTSFKARSGPLQYGMGSG 427
SVLEALLQSCS + G SHP + ENG T+EK L PQTSFKARSGPLQY M +
Sbjct: 368 SVLEALLQSCSPVQGGTGGSHPQDSSYSENG---TDEKTLVPQTSFKARSGPLQYAMMAA 424
Query: 426 LVS---VLGQGGPTEPGMSQREVTLQNTRLILGRVLDRSALGKRKDHKKLVPFVVNIGN 259
+S LG E G+ R+V LQNTRL+LGRVLD ALG R+D+++LVPFV I N
Sbjct: 425 TMSQPFPLG-AAAAESGIPPRDVALQNTRLMLGRVLDNCALG-RRDYRRLVPFVTTIAN 481
>sp|P14723|YWIS_WHEAT Hypothetical 16 kDa protein in middle repetitive insertion sequence
WIS1 gi|100793|pir||S10084 hypothetical 16K protein -
wheat insertion sequence WIS1 gi|21904|emb|CAA33880.1|
unidentified reading frame [Triticum aestivum]
Length = 151
Score = 36.2 bits (82), Expect = 0.32
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Frame = +2
Query: 305 LLPNALLSNTRP--RIRRVFCKVTSL-------------CDIPGSVGPPCPRTETSPEPI 439
LLP+ LS+ P ++R + C ++ CD P PP P S P
Sbjct: 21 LLPSPSLSSPAPSPQLRSLSCTTSAAATPVPVPHHCLRCCDPPPPPPPPTPSPSISLLPF 80
Query: 440 PYCRGPLRALNEVCGASNFSS 502
P+ GP ALN V +FSS
Sbjct: 81 PFSDGPRLALNPVIPDDHFSS 101
>ref|NP_473253.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23477015|emb|CAB38986.3| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1816
Score = 35.4 bits (80), Expect = 0.55
Identities = 17/54 (31%), Positives = 33/54 (60%), Gaps = 1/54 (1%)
Frame = +2
Query: 65 IEVKLRMIFDIKRMLS-IVYNYTESYKTAIPVTRCLCTTTVLEQTLIHLG*NIY 223
I+ ++++F+I + + I+Y+Y +S+K P+T+ T L LIH+ N+Y
Sbjct: 152 IKDNIKVLFNIDYIENNIIYSYIKSFKRTPPITKIYLLGTFLLSVLIHMNKNVY 205
>gb|ZP_00006653.1| hypothetical protein [Rhodobacter sphaeroides]
Length = 607
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -2
Query: 405 GGPTEPGMSQREVTLQNTRLILGRVLDRSALGKRKDHKKLVPFVVNIG 262
GG EPG R TL++ L+ R A GKR H + PF +++G
Sbjct: 22 GGADEPGPRSRRATLRHFSLLSACADSRGATGKRSQH--MFPFPLSVG 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,629,025
Number of Sequences: 1393205
Number of extensions: 11991152
Number of successful extensions: 36110
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 33649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36008
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
