Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018530A_C01 KMC018530A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thalia... 222 3e-57
ref|NP_194688.1| putative protein; protein id: At4g29590.1 [Arab... 222 3e-57
gb|AAM61165.1| unknown [Arabidopsis thaliana] 221 7e-57
dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-gro... 220 1e-56
gb|ZP_00017842.1| hypothetical protein [Chloroflexus aurantiacus] 125 3e-28
>gb|AAK53012.1|AF375428_1 AT4g29590/T16L4_100 [Arabidopsis thaliana]
gi|21464553|gb|AAM52231.1| AT4g29590/T16L4_100
[Arabidopsis thaliana]
Length = 250
Score = 222 bits (565), Expect = 3e-57
Identities = 103/118 (87%), Positives = 113/118 (95%)
Frame = -3
Query: 573 TEYIVQDLNVNPRLPFEDNSFDIITNVVSVDYITKPLDVFKEMSRILKPGGLAIMSFSNR 394
TEYIVQDLN+N LPFEDNSF +ITNVVSVDY+TKPL+VFKEM+RILKPGGLA+MSFSNR
Sbjct: 130 TEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLALMSFSNR 189
Query: 393 CFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKV 220
CF+TKAISIWTSTGDADH +IVGSYFHYAGGFE PQAVDISPNPGRSDPMY+VYSRK+
Sbjct: 190 CFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRKL 247
>ref|NP_194688.1| putative protein; protein id: At4g29590.1 [Arabidopsis thaliana]
gi|7487096|pir||T09922 hypothetical protein T16L4.100 -
Arabidopsis thaliana gi|5123553|emb|CAB45319.1| putative
protein [Arabidopsis thaliana]
gi|7269858|emb|CAB79717.1| putative protein [Arabidopsis
thaliana]
Length = 317
Score = 222 bits (565), Expect = 3e-57
Identities = 103/118 (87%), Positives = 113/118 (95%)
Frame = -3
Query: 573 TEYIVQDLNVNPRLPFEDNSFDIITNVVSVDYITKPLDVFKEMSRILKPGGLAIMSFSNR 394
TEYIVQDLN+N LPFEDNSF +ITNVVSVDY+TKPL+VFKEM+RILKPGGLA+MSFSNR
Sbjct: 197 TEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLALMSFSNR 256
Query: 393 CFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKV 220
CF+TKAISIWTSTGDADH +IVGSYFHYAGGFE PQAVDISPNPGRSDPMY+VYSRK+
Sbjct: 257 CFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRKL 314
>gb|AAM61165.1| unknown [Arabidopsis thaliana]
Length = 317
Score = 221 bits (562), Expect = 7e-57
Identities = 102/118 (86%), Positives = 113/118 (95%)
Frame = -3
Query: 573 TEYIVQDLNVNPRLPFEDNSFDIITNVVSVDYITKPLDVFKEMSRILKPGGLAIMSFSNR 394
TEYIVQDLN+N LPFEDNSF +ITNVVSVDY+TKPL+VFKEM+RILKPGGL++MSFSNR
Sbjct: 197 TEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLSLMSFSNR 256
Query: 393 CFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKV 220
CF+TKAISIWTSTGDADH +IVGSYFHYAGGFE PQAVDISPNPGRSDPMY+VYSRK+
Sbjct: 257 CFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRKL 314
>dbj|BAB89117.1| B1142C05.17 [Oryza sativa (japonica cultivar-group)]
Length = 307
Score = 220 bits (560), Expect = 1e-56
Identities = 100/117 (85%), Positives = 110/117 (93%)
Frame = -3
Query: 573 TEYIVQDLNVNPRLPFEDNSFDIITNVVSVDYITKPLDVFKEMSRILKPGGLAIMSFSNR 394
TEY+VQDLNVNP+LPFEDN+FD+ITNVVSVDY+TKP+DVFKEM RILKP GLAIMSFSNR
Sbjct: 188 TEYVVQDLNVNPKLPFEDNTFDVITNVVSVDYLTKPIDVFKEMRRILKPSGLAIMSFSNR 247
Query: 393 CFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRK 223
CFWTKAISIWTST DADH IVG+YFHYAG FEPP+AVDISPNPGR+DPMY+V SRK
Sbjct: 248 CFWTKAISIWTSTSDADHAWIVGAYFHYAGDFEPPEAVDISPNPGRTDPMYVVQSRK 304
>gb|ZP_00017842.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 218
Score = 125 bits (315), Expect = 3e-28
Identities = 58/117 (49%), Positives = 82/117 (69%)
Frame = -3
Query: 570 EYIVQDLNVNPRLPFEDNSFDIITNVVSVDYITKPLDVFKEMSRILKPGGLAIMSFSNRC 391
EY++ DLN P+LPF D +FD + VSV Y+T+P++VF +++RILKPGG I++FSNRC
Sbjct: 101 EYVIHDLNAQPQLPFPDATFDGVICTVSVQYMTRPVEVFADVARILKPGGPFIVTFSNRC 160
Query: 390 FWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKV 220
F +KA+ IW +T D H+ +V YF AGGF + +D SP+ SDP+Y V R+V
Sbjct: 161 FPSKAVRIWLATNDRQHLELVRCYFELAGGFTNIRCLDRSPHHWLSDPLYAVVGRRV 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,358,519
Number of Sequences: 1393205
Number of extensions: 10917324
Number of successful extensions: 25514
Number of sequences better than 10.0: 485
Number of HSP's better than 10.0 without gapping: 24645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25453
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
