Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018529A_C01 KMC018529A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichori... 164 8e-40
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori... 162 2e-39
emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichori... 162 2e-39
emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichori... 162 2e-39
emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichori... 162 2e-39
>emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 164 bits (414), Expect = 8e-40
Identities = 81/130 (62%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = -1
Query: 526 RYHSLAPMYYRGAAAAIVVYDISSIDTFVQAQKWVQELPRHGNPKLVMALAANQSDLEPK 347
RYHSLAPMYYRGAAAAI+VYDI+S D+F +A+KWVQEL + GNP +VMALA N++DLE K
Sbjct: 67 RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 126
Query: 346 REVETEEGEKFAPENGMFYMETSAKTAENINELFYEIAKRLARALPLK-PSGISLNHDNP 170
REV EE +A ENG+F+METSAKTA N+N++F+EIAKRL RA P + P+G+ L
Sbjct: 127 REVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPA 186
Query: 169 DRGRNFFCCS 140
+ R CCS
Sbjct: 187 EGARAASCCS 196
>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 162 bits (410), Expect = 2e-39
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = -1
Query: 526 RYHSLAPMYYRGAAAAIVVYDISSIDTFVQAQKWVQELPRHGNPKLVMALAANQSDLEPK 347
RYHSLAPMYYRGAAAAI+VYDI+S D+F +A+KWVQEL + GNP +VMALA N++DLE K
Sbjct: 67 RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 126
Query: 346 REVETEEGEKFAPENGMFYMETSAKTAENINELFYEIAKRLARALPLK-PSGISLNHDNP 170
R+V EE +A ENG+F+METSAKTA N+N++F+EIAKRL RA P + P+G+ L
Sbjct: 127 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPA 186
Query: 169 DRGRNFFCCS 140
+ R CCS
Sbjct: 187 EGARAASCCS 196
>emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 162 bits (410), Expect = 2e-39
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = -1
Query: 526 RYHSLAPMYYRGAAAAIVVYDISSIDTFVQAQKWVQELPRHGNPKLVMALAANQSDLEPK 347
RYHSLAPMYYRGAAAAI+VYDI+S D+F +A+KWVQEL + GNP +VMALA N++DLE K
Sbjct: 71 RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130
Query: 346 REVETEEGEKFAPENGMFYMETSAKTAENINELFYEIAKRLARALPLK-PSGISLNHDNP 170
R+V EE +A ENG+F+METSAKTA N+N++F+EIAKRL RA P + P+G+ L
Sbjct: 131 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPA 190
Query: 169 DRGRNFFCCS 140
+ R CCS
Sbjct: 191 EGARAASCCS 200
>emb|CAC24477.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 162 bits (410), Expect = 2e-39
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = -1
Query: 526 RYHSLAPMYYRGAAAAIVVYDISSIDTFVQAQKWVQELPRHGNPKLVMALAANQSDLEPK 347
RYHSLAPMYYRGAAAAI+VYDI+S D+F +A+KWVQEL + GNP +VMALA N++DLE K
Sbjct: 71 RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130
Query: 346 REVETEEGEKFAPENGMFYMETSAKTAENINELFYEIAKRLARALPLK-PSGISLNHDNP 170
R+V EE +A ENG+F+METSAKTA N+N++F+EIAKRL RA P + P+G+ L
Sbjct: 131 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPA 190
Query: 169 DRGRNFFCCS 140
+ R CCS
Sbjct: 191 EGARAASCCS 200
>emb|CAC24476.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 162 bits (410), Expect = 2e-39
Identities = 80/130 (61%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
Frame = -1
Query: 526 RYHSLAPMYYRGAAAAIVVYDISSIDTFVQAQKWVQELPRHGNPKLVMALAANQSDLEPK 347
RYHSLAPMYYRGAAAAI+VYDI+S D+F +A+KWVQEL + GNP +VMALA N++DLE K
Sbjct: 71 RYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKADLEDK 130
Query: 346 REVETEEGEKFAPENGMFYMETSAKTAENINELFYEIAKRLARALPLK-PSGISLNHDNP 170
R+V EE +A ENG+F+METSAKTA N+N++F+EIAKRL RA P + P+G+ L
Sbjct: 131 RKVTAEEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPA 190
Query: 169 DRGRNFFCCS 140
+ R CCS
Sbjct: 191 EGARAASCCS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,258,954
Number of Sequences: 1393205
Number of extensions: 10377939
Number of successful extensions: 29820
Number of sequences better than 10.0: 1459
Number of HSP's better than 10.0 without gapping: 28484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29487
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
