Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018499A_C01 KMC018499A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10849.1| hypothetical protein~similar to Arabidopsis thal... 80 3e-14
ref|NP_195696.1| putative protein; protein id: At4g39860.1, supp... 80 3e-14
gb|AAM62782.1| unknown [Arabidopsis thaliana] 80 3e-14
gb|AAL36221.1| unknown protein [Arabidopsis thaliana] gi|2143638... 80 3e-14
ref|NP_177939.1| unknown protein; protein id: At1g78150.1 [Arabi... 72 9e-12
>dbj|BAC10849.1| hypothetical protein~similar to Arabidopsis thaliana
chromosome1,At1g78150 [Oryza sativa (japonica
cultivar-group)]
Length = 287
Score = 80.1 bits (196), Expect = 3e-14
Identities = 41/66 (62%), Positives = 54/66 (81%)
Frame = -2
Query: 688 KLAELTGTNIFQGNNPPGSAEKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGE 509
KL +LTG +IF+G+ PG+AEK LS AKL+E+TGS+IF AD KA ++D + G R+PPGGE
Sbjct: 223 KLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIF-ADGKAPSRDYLGGIRKPPGGE 281
Query: 508 SSIALL 491
SSIAL+
Sbjct: 282 SSIALV 287
Score = 32.7 bits (73), Expect = 4.9
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = -2
Query: 628 EKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQP 521
+KP S K +E+TGS IFAA+ + E + S P
Sbjct: 66 KKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATP 101
>ref|NP_195696.1| putative protein; protein id: At4g39860.1, supported by cDNA:
15747. [Arabidopsis thaliana] gi|7487706|pir||T06092
hypothetical protein T5J17.30 - Arabidopsis thaliana
gi|4490737|emb|CAB38899.1| putative protein [Arabidopsis
thaliana] gi|7271041|emb|CAB80649.1| putative protein
[Arabidopsis thaliana]
Length = 299
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = -2
Query: 688 KLAELTGTNIFQGNNPPGSAEKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGE 509
K ELTG IF+G+ PGSA+K LS AKLRE++G+NIF AD K+E++D G R+PPGGE
Sbjct: 235 KFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIF-ADGKSESRDYFGGVRKPPGGE 293
Query: 508 SSIALL 491
SSI+L+
Sbjct: 294 SSISLV 299
>gb|AAM62782.1| unknown [Arabidopsis thaliana]
Length = 299
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = -2
Query: 688 KLAELTGTNIFQGNNPPGSAEKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGE 509
K ELTG IF+G+ PGSA+K LS AKLRE++G+NIF AD K+E++D G R+PPGGE
Sbjct: 235 KFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIF-ADGKSESRDYFGGVRKPPGGE 293
Query: 508 SSIALL 491
SSI+L+
Sbjct: 294 SSISLV 299
>gb|AAL36221.1| unknown protein [Arabidopsis thaliana] gi|21436383|gb|AAM51361.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 79.7 bits (195), Expect = 3e-14
Identities = 40/66 (60%), Positives = 52/66 (78%)
Frame = -2
Query: 688 KLAELTGTNIFQGNNPPGSAEKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGE 509
K ELTG IF+G+ PGSA+K LS AKLRE++G+NIF AD K+E++D G R+PPGGE
Sbjct: 234 KFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIF-ADGKSESRDYFGGVRKPPGGE 292
Query: 508 SSIALL 491
SSI+L+
Sbjct: 293 SSISLV 298
>ref|NP_177939.1| unknown protein; protein id: At1g78150.1 [Arabidopsis thaliana]
gi|25361078|pir||G96810 unknown protein T11I11.9
[imported] - Arabidopsis thaliana
gi|12324259|gb|AAG52106.1|AC012680_17 unknown protein;
39760-41105 [Arabidopsis thaliana]
Length = 283
Score = 71.6 bits (174), Expect = 9e-12
Identities = 36/66 (54%), Positives = 50/66 (75%)
Frame = -2
Query: 688 KLAELTGTNIFQGNNPPGSAEKPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGE 509
K AEL+G +IF+G+ + EK LS+AKL+E+ G+NIF AD K E +D + G R+PPGGE
Sbjct: 219 KFAELSGNDIFKGDAASSNVEKHLSQAKLKEIGGNNIF-ADGKVEARDYLGGVRKPPGGE 277
Query: 508 SSIALL 491
+SIAL+
Sbjct: 278 TSIALV 283
Score = 35.0 bits (79), Expect = 0.98
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -2
Query: 625 KPLSRAKLREVTGSNIFAADAKAETKDPIRGSRQPPGGESSIA 497
KP S K++E+TGS IF+ + K + +P+ +Q G S I+
Sbjct: 67 KPCSEHKMKEITGSGIFSRNEKDDASEPLPVYQQAVNGISQIS 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,492,000
Number of Sequences: 1393205
Number of extensions: 11641938
Number of successful extensions: 29961
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29929
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
