Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018465A_C01 KMC018465A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172064.1| hypothetical Protein; protein id: At1g05730.1 [... 52 8e-06
ref|NP_565729.1| expressed protein; protein id: At2g31725.1, sup... 48 9e-05
ref|NP_181900.1| hypothetical protein; protein id: At2g43720.1, ... 47 3e-04
ref|NP_696972.1| NADH dehydrogenase subunit 5 [Monosiga brevicol... 35 1.0
>ref|NP_172064.1| hypothetical Protein; protein id: At1g05730.1 [Arabidopsis
thaliana] gi|25406857|pir||F86191 hypothetical protein
[imported] - Arabidopsis thaliana
gi|4836920|gb|AAD30622.1|AC007153_14 Hypothetical
Protein [Arabidopsis thaliana]
Length = 161
Score = 51.6 bits (122), Expect = 8e-06
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Frame = -1
Query: 617 VCQDKFEAAKLQQKAG-ATTDMISCADQAIQDSIKMLPILTNRLKSSFGIRE 465
VCQDKFEAAKL + G A M SC + +I+DS+ LP + R+K+SF I +
Sbjct: 110 VCQDKFEAAKLHKNRGDAAKAMESCVNTSIEDSLDTLPHIVQRMKTSFSIAD 161
>ref|NP_565729.1| expressed protein; protein id: At2g31725.1, supported by cDNA:
25159. [Arabidopsis thaliana] gi|20197845|gb|AAM15277.1|
expressed protein [Arabidopsis thaliana]
gi|20198066|gb|AAM15381.1| expressed protein
[Arabidopsis thaliana] gi|21554341|gb|AAM63448.1|
unknown [Arabidopsis thaliana]
Length = 149
Score = 48.1 bits (113), Expect = 9e-05
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = -1
Query: 617 VCQDKFEAAKLQQ-KAGATTDMISCADQAIQDSIKMLPILTNRLKSSFGI 471
VCQDKFEA+KLQ+ + A +M SC ++I++++ LP + R+K++F I
Sbjct: 98 VCQDKFEASKLQKIRPEAVNEMESCVHKSIEENLNTLPHIVQRMKTAFNI 147
>ref|NP_181900.1| hypothetical protein; protein id: At2g43720.1, supported by cDNA:
gi_18491242 [Arabidopsis thaliana]
gi|25408895|pir||F84869 hypothetical protein At2g43720
[imported] - Arabidopsis thaliana
gi|2281098|gb|AAB64034.1| hypothetical protein
[Arabidopsis thaliana] gi|18491243|gb|AAL69446.1|
At2g43720/F18O19.17 [Arabidopsis thaliana]
Length = 147
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = -1
Query: 617 VCQDKFEAAKLQQ-KAGATTDMISCADQAIQDSIKMLPILTNRLKSSFGIRE 465
VCQDKFE AK Q+ ++ A D+ C +Q + +++K LP L +R+K + I +
Sbjct: 96 VCQDKFEVAKQQKTRSEAVNDLEHCVNQTVDEAVKTLPNLVSRMKKALSITD 147
>ref|NP_696972.1| NADH dehydrogenase subunit 5 [Monosiga brevicollis]
gi|23344067|gb|AAN28343.1| NADH dehydrogenase subunit 5
[Monosiga brevicollis]
Length = 688
Score = 34.7 bits (78), Expect = 1.0
Identities = 19/47 (40%), Positives = 24/47 (50%)
Frame = -1
Query: 152 LNGDSYLVCILNWWSVECCLTSRLLVWFWF*YGRVSVNDRCCKRKFM 12
+ DSYL+C+ W SV C S LL+ FW Y R+ N K M
Sbjct: 129 VTADSYLLCVWGWESVGIC--SYLLINFW--YTRIQANKSAIKAMVM 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,063,709
Number of Sequences: 1393205
Number of extensions: 9439831
Number of successful extensions: 16206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16204
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
