Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018452A_C01 KMC018452A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201266.1| histone acetyltransferase; protein id: At5g6461... 108 9e-39
pir||T14282 embryogenic callus protein 181 - carrot (fragment) g... 107 1e-38
gb|AAM63720.1| embryogenic callus protein-like [Arabidopsis thal... 106 2e-37
ref|NP_196536.1| embryogenic callus protein - like; protein id: ... 106 2e-37
dbj|BAC41804.1| putative embryogenic callus protein [Arabidopsis... 106 2e-37
>ref|NP_201266.1| histone acetyltransferase; protein id: At5g64610.1, supported by
cDNA: gi_20466435 [Arabidopsis thaliana]
gi|10178064|dbj|BAB11428.1| histone acetyltransferase
[Arabidopsis thaliana] gi|20466436|gb|AAM20535.1|
histone acetyltransferase [Arabidopsis thaliana]
gi|23198138|gb|AAN15596.1| histone acetyltransferase
[Arabidopsis thaliana]
Length = 445
Score = 108 bits (269), Expect(2) = 9e-39
Identities = 51/54 (94%), Positives = 53/54 (97%)
Frame = -2
Query: 409 LTPLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 248
L+ LQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSK+IWTPYKEQS
Sbjct: 392 LSTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKMIWTPYKEQS 445
Score = 73.6 bits (179), Expect(2) = 9e-39
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = -1
Query: 518 YRGYWTRVLLDILKKHKGNISIKELSDMTPLKAEDII 408
YRGYWTR+LLDILKKHKGNISIKELSDMT +KAEDI+
Sbjct: 356 YRGYWTRILLDILKKHKGNISIKELSDMTAIKAEDIL 392
>pir||T14282 embryogenic callus protein 181 - carrot (fragment)
gi|3551247|dbj|BAA32822.1| 181 [Daucus carota]
Length = 433
Score = 107 bits (267), Expect(2) = 1e-38
Identities = 51/53 (96%), Positives = 52/53 (97%)
Frame = -2
Query: 409 LTPLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQ 251
LT LQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGL+VDVSKLIWTPYKEQ
Sbjct: 380 LTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLEVDVSKLIWTPYKEQ 432
Score = 73.9 bits (180), Expect(2) = 1e-38
Identities = 34/37 (91%), Positives = 36/37 (96%)
Frame = -1
Query: 518 YRGYWTRVLLDILKKHKGNISIKELSDMTPLKAEDII 408
YRGYWTRVLLDILKKHKGNISIKELSDMT +KAEDI+
Sbjct: 344 YRGYWTRVLLDILKKHKGNISIKELSDMTAIKAEDIL 380
>gb|AAM63720.1| embryogenic callus protein-like [Arabidopsis thaliana]
Length = 445
Score = 106 bits (264), Expect(2) = 2e-37
Identities = 50/54 (92%), Positives = 52/54 (95%)
Frame = -2
Query: 409 LTPLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 248
L+ LQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVD SKLIWTPYK+QS
Sbjct: 392 LSTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDASKLIWTPYKDQS 445
Score = 70.9 bits (172), Expect(2) = 2e-37
Identities = 32/37 (86%), Positives = 36/37 (96%)
Frame = -1
Query: 518 YRGYWTRVLLDILKKHKGNISIKELSDMTPLKAEDII 408
YRGYWTRVLL+ILKKHKGNISIKELSD+T +KAEDI+
Sbjct: 356 YRGYWTRVLLEILKKHKGNISIKELSDVTAIKAEDIL 392
>ref|NP_196536.1| embryogenic callus protein - like; protein id: At5g09740.1,
supported by cDNA: 266771. [Arabidopsis thaliana]
gi|11281989|pir||T49924 embryogenic callus protein-like
- Arabidopsis thaliana gi|7671415|emb|CAB89356.1|
embryogenic callus protein-like [Arabidopsis thaliana]
gi|9759005|dbj|BAB09532.1| embryogenic callus protein
181; contains similarity to histone acetyltransferase
[Arabidopsis thaliana]
Length = 445
Score = 106 bits (264), Expect(2) = 2e-37
Identities = 50/54 (92%), Positives = 52/54 (95%)
Frame = -2
Query: 409 LTPLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 248
L+ LQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVD SKLIWTPYK+QS
Sbjct: 392 LSTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDASKLIWTPYKDQS 445
Score = 70.9 bits (172), Expect(2) = 2e-37
Identities = 32/37 (86%), Positives = 36/37 (96%)
Frame = -1
Query: 518 YRGYWTRVLLDILKKHKGNISIKELSDMTPLKAEDII 408
YRGYWTRVLL+ILKKHKGNISIKELSD+T +KAEDI+
Sbjct: 356 YRGYWTRVLLEILKKHKGNISIKELSDVTAIKAEDIL 392
>dbj|BAC41804.1| putative embryogenic callus protein [Arabidopsis thaliana]
Length = 367
Score = 106 bits (264), Expect(2) = 2e-37
Identities = 50/54 (92%), Positives = 52/54 (95%)
Frame = -2
Query: 409 LTPLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQS 248
L+ LQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVD SKLIWTPYK+QS
Sbjct: 314 LSTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDASKLIWTPYKDQS 367
Score = 70.9 bits (172), Expect(2) = 2e-37
Identities = 32/37 (86%), Positives = 36/37 (96%)
Frame = -1
Query: 518 YRGYWTRVLLDILKKHKGNISIKELSDMTPLKAEDII 408
YRGYWTRVLL+ILKKHKGNISIKELSD+T +KAEDI+
Sbjct: 278 YRGYWTRVLLEILKKHKGNISIKELSDVTAIKAEDIL 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,871,074
Number of Sequences: 1393205
Number of extensions: 7460019
Number of successful extensions: 17666
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 17289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17657
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
