Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018447A_C01 KMC018447A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana gi|... 62 6e-09
ref|NP_564018.1| oligouridylate binding protein (UBP1), putative... 62 6e-09
ref|NP_188026.1| oligouridylate binding protein (UBP1), putative... 61 8e-09
gb|AAM65229.1| oligouridylate binding protein, putative [Arabido... 60 1e-08
gb|AAC32113.1| putative RNA-binding protein [Picea mariana] 59 5e-08
>pir||C86310 protein F1L3.2 [imported] - Arabidopsis thaliana
gi|8778484|gb|AAF79492.1|AC022492_36 F1L3.2 [Arabidopsis
thaliana]
Length = 575
Score = 61.6 bits (148), Expect = 6e-09
Identities = 40/90 (44%), Positives = 55/90 (60%)
Frame = -2
Query: 548 PLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAP 369
PLPPPA P G+S ++LLAY+RQLA+S+ A G++ + GQH
Sbjct: 501 PLPPPAPAPIP---------GFSASDLLAYERQLAMSKMA--GMN-PMMHHPQGQHAFKQ 548
Query: 368 ASMGINTGASQAMYDGYAGNSSRQQLMYYR 279
A+MG TG++QA+YDG G + QQLMYY+
Sbjct: 549 AAMGA-TGSNQAIYDG--GYQNAQQLMYYQ 575
>ref|NP_564018.1| oligouridylate binding protein (UBP1), putative; protein id:
At1g17370.1, supported by cDNA: 17210. [Arabidopsis
thaliana] gi|9665134|gb|AAF97318.1|AC007843_21 Putative
RNA binding protein [Arabidopsis thaliana]
gi|21553830|gb|AAM62923.1| oligouridylate binding
protein, putative [Arabidopsis thaliana]
Length = 419
Score = 61.6 bits (148), Expect = 6e-09
Identities = 40/90 (44%), Positives = 55/90 (60%)
Frame = -2
Query: 548 PLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAP 369
PLPPPA P G+S ++LLAY+RQLA+S+ A G++ + GQH
Sbjct: 345 PLPPPAPAPIP---------GFSASDLLAYERQLAMSKMA--GMN-PMMHHPQGQHAFKQ 392
Query: 368 ASMGINTGASQAMYDGYAGNSSRQQLMYYR 279
A+MG TG++QA+YDG G + QQLMYY+
Sbjct: 393 AAMGA-TGSNQAIYDG--GYQNAQQLMYYQ 419
>ref|NP_188026.1| oligouridylate binding protein (UBP1), putative; protein id:
At3g14100.1, supported by cDNA: 37712. [Arabidopsis
thaliana] gi|9294635|dbj|BAB02974.1| RNA binding protein
nucleolysin; oligouridylate binding protein [Arabidopsis
thaliana] gi|22655004|gb|AAM98093.1| AT3g14100/MAG2_5
[Arabidopsis thaliana] gi|28416511|gb|AAO42786.1|
AT3g14100/MAG2_5 [Arabidopsis thaliana]
Length = 427
Score = 61.2 bits (147), Expect = 8e-09
Identities = 44/92 (47%), Positives = 53/92 (56%), Gaps = 2/92 (2%)
Frame = -2
Query: 548 PLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAP 369
PLPPPA P G S A+LL Y+RQLALS+ A S AL+ GQH L
Sbjct: 350 PLPPPAPAPVP---------GLSAADLLNYERQLALSKMA----SVNALMHQQGQHPLRQ 396
Query: 368 ASMGIN-TGASQAMYD-GYAGNSSRQQLMYYR 279
A GIN GA+ AMYD G+ ++ QQLMYY+
Sbjct: 397 AH-GINAAGATAAMYDGGFQNVAAAQQLMYYQ 427
>gb|AAM65229.1| oligouridylate binding protein, putative [Arabidopsis thaliana]
Length = 427
Score = 60.5 bits (145), Expect = 1e-08
Identities = 44/92 (47%), Positives = 53/92 (56%), Gaps = 2/92 (2%)
Frame = -2
Query: 548 PLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAP 369
PLPPPA P G S A+LL Y+RQLALS+ A S AL+ GQH L
Sbjct: 350 PLPPPAPAPVP---------GLSAADLLNYERQLALSKMA----SVNALMHPQGQHPLRQ 396
Query: 368 ASMGIN-TGASQAMYD-GYAGNSSRQQLMYYR 279
A GIN GA+ AMYD G+ ++ QQLMYY+
Sbjct: 397 AH-GINAAGATAAMYDGGFQNVAAAQQLMYYQ 427
>gb|AAC32113.1| putative RNA-binding protein [Picea mariana]
Length = 169
Score = 58.5 bits (140), Expect = 5e-08
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 16/105 (15%)
Frame = -2
Query: 545 LPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQH----G 378
LPPP+A ++ G+NQGY+ A++LAY RQL +SQA +GQ LL ++ Q G
Sbjct: 71 LPPPSAPFQGVVAPQGLNQGYTAADILAY-RQLNMSQAG----AGQPLLPLSAQQGMGLG 125
Query: 377 LAPASMGINTGASQAMYDGY------------AGNSSRQQLMYYR 279
L MG+ G +Q +YD + A + RQQ+MYY+
Sbjct: 126 LGHGPMGV-VGPNQNVYDNFQAGAGLPAAAAAAAAAMRQQIMYYQ 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,445,644
Number of Sequences: 1393205
Number of extensions: 10701984
Number of successful extensions: 29445
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29404
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
