Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018436A_C01 KMC018436A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E96758 hypothetical protein T18K17.9 [imported] - Arabidops... 140 8e-33
ref|NP_565060.1| expressed protein; protein id: At1g73240.1, sup... 140 8e-33
gb|AAM20470.1| unknown protein [Arabidopsis thaliana] gi|2489984... 139 2e-32
ref|NP_229819.1| ketol-acid reductoisomerase [Vibrio cholerae] g... 33 2.9
gb|AAC14926.1| T cell receptor alpha chain [Homo sapiens] 32 6.4
>pir||E96758 hypothetical protein T18K17.9 [imported] - Arabidopsis thaliana
gi|12324318|gb|AAG52127.1|AC010556_9 hypothetical
protein; 23039-25310 [Arabidopsis thaliana]
Length = 501
Score = 140 bits (354), Expect = 8e-33
Identities = 69/112 (61%), Positives = 85/112 (75%)
Frame = -1
Query: 540 LAVENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRT 361
LA+E FMGKKTNLQSP QL+GPA IKWAT++ R DV +KR G + AYA DVLR
Sbjct: 390 LAIETFMGKKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRI 449
Query: 360 SIYQIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRA 205
S+YQI+S F DEML +A LL +DWI S KP FGT++ML+QKL+LFL+F+A
Sbjct: 450 SVYQILSTFRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 501
>ref|NP_565060.1| expressed protein; protein id: At1g73240.1, supported by cDNA:
38940., supported by cDNA: gi_20466305 [Arabidopsis
thaliana] gi|21593434|gb|AAM65401.1| unknown
[Arabidopsis thaliana]
Length = 519
Score = 140 bits (354), Expect = 8e-33
Identities = 69/112 (61%), Positives = 85/112 (75%)
Frame = -1
Query: 540 LAVENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRT 361
LA+E FMGKKTNLQSP QL+GPA IKWAT++ R DV +KR G + AYA DVLR
Sbjct: 408 LAIETFMGKKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRI 467
Query: 360 SIYQIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRA 205
S+YQI+S F DEML +A LL +DWI S KP FGT++ML+QKL+LFL+F+A
Sbjct: 468 SVYQILSTFRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519
>gb|AAM20470.1| unknown protein [Arabidopsis thaliana] gi|24899841|gb|AAN65135.1|
unknown protein [Arabidopsis thaliana]
Length = 519
Score = 139 bits (350), Expect = 2e-32
Identities = 68/112 (60%), Positives = 85/112 (75%)
Frame = -1
Query: 540 LAVENFMGKKTNLQSPNQLLGPAGIKWATANSGRVDVPAVKRRTGPVNPKAYAIADVLRT 361
LA++ FMGKKTNLQSP QL+GPA IKWAT++ R DV +KR G + AYA DVLR
Sbjct: 408 LAIKTFMGKKTNLQSPQQLMGPASIKWATSSMVRKDVKPIKRSIGAMYAYAYAATDVLRI 467
Query: 360 SIYQIVSAFHDEMLAGSKASLLEKDWITSGKPLFGTHEMLIQKLRLFLDFRA 205
S+YQI+S F DEML +A LL +DWI S KP FGT++ML+QKL+LFL+F+A
Sbjct: 468 SVYQILSTFRDEMLNSDRAGLLGRDWIGSKKPPFGTNDMLLQKLKLFLEFQA 519
>ref|NP_229819.1| ketol-acid reductoisomerase [Vibrio cholerae]
gi|18203206|sp|Q9KVI4|ILVC_VIBCH Ketol-acid
reductoisomerase (Acetohydroxy-acid isomeroreductase)
(Alpha-keto-beta-hydroxylacil reductoisomerase)
gi|11251559|pir||G82356 ketol-acid reductoisomerase
VC0162 [imported] - Vibrio cholerae (strain N16961
serogroup O1) gi|9654564|gb|AAF93338.1| ketol-acid
reductoisomerase [Vibrio cholerae]
Length = 494
Score = 32.7 bits (73), Expect = 2.9
Identities = 14/54 (25%), Positives = 29/54 (52%)
Frame = -1
Query: 417 RRTGPVNPKAYAIADVLRTSIYQIVSAFHDEMLAGSKASLLEKDWITSGKPLFG 256
R + P KA+ +++ L+ + + + D++++G +S + DW K LFG
Sbjct: 276 RLSNPAKIKAFELSEELKDLMRPLYNKHMDDIISGHFSSTMMADWANDDKDLFG 329
>gb|AAC14926.1| T cell receptor alpha chain [Homo sapiens]
Length = 270
Score = 31.6 bits (70), Expect = 6.4
Identities = 17/41 (41%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = -2
Query: 161 IFWIKQYACETHRLLSRGGIDGME--GKGSILLSEICDEGY 45
+FW +Q+A E LS G+DG+E G+ S LS GY
Sbjct: 49 LFWYQQHAGEAPTFLSYNGLDGLEETGRFSSFLSRSDSYGY 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,695,211
Number of Sequences: 1393205
Number of extensions: 9884378
Number of successful extensions: 25777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25766
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
