Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018425A_C01 KMC018425A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194580.1| prohibitin-like protein; protein id: At4g28510.... 126 1e-28
gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana] 126 1e-28
gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus] 121 4e-27
ref|NP_171882.1| putative prohibitin 2; protein id: At1g03860.1,... 121 6e-27
gb|AAF68384.1|AF236368_1 prohibitin [Zea mays] 120 1e-26
>ref|NP_194580.1| prohibitin-like protein; protein id: At4g28510.1, supported by
cDNA: 40688., supported by cDNA: gi_20260657, supported
by cDNA: gi_4097687 [Arabidopsis thaliana]
gi|7488227|pir||T04622 prohibitin-like protein F20O9.200
- Arabidopsis thaliana gi|2842494|emb|CAA16891.1|
prohibitin-like protein [Arabidopsis thaliana]
gi|4097688|gb|AAD00155.1| prohibitin 1
gi|4097694|gb|AAD00158.1| prohibitin 1 [Arabidopsis
thaliana] gi|7269706|emb|CAB81439.1| prohibitin-like
protein [Arabidopsis thaliana]
gi|20260658|gb|AAM13227.1| prohibitin-like protein
[Arabidopsis thaliana] gi|23198006|gb|AAN15530.1|
prohibitin-like protein [Arabidopsis thaliana]
Length = 288
Score = 126 bits (317), Expect = 1e-28
Identities = 67/86 (77%), Positives = 78/86 (89%)
Frame = -1
Query: 529 VAAQEAERAKFVVEKAAPDQRSAVIRAPGEAQSAPLIGPAIAHNPAFITLRRIEAAREIA 350
VAAQEAERAKF+VEKA D+RSAVIRA GEA+SA LIG AIA+N AFITLR+IEAAREIA
Sbjct: 197 VAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNQAFITLRKIEAAREIA 256
Query: 349 HTISNSAHQVYLNSDDLLLDLQGLKL 272
TI+NSA++VYL+SDDLLL+LQG+ L
Sbjct: 257 QTIANSANKVYLSSDDLLLNLQGMNL 282
>gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana]
Length = 288
Score = 126 bits (317), Expect = 1e-28
Identities = 67/86 (77%), Positives = 78/86 (89%)
Frame = -1
Query: 529 VAAQEAERAKFVVEKAAPDQRSAVIRAPGEAQSAPLIGPAIAHNPAFITLRRIEAAREIA 350
VAAQEAERAKF+VEKA D+RSAVIRA GEA+SA LIG AIA+N AFITLR+IEAAREIA
Sbjct: 197 VAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNQAFITLRKIEAAREIA 256
Query: 349 HTISNSAHQVYLNSDDLLLDLQGLKL 272
TI+NSA++VYL+SDDLLL+LQG+ L
Sbjct: 257 QTIANSANKVYLSSDDLLLNLQGMNL 282
>gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus]
Length = 290
Score = 121 bits (304), Expect = 4e-27
Identities = 65/86 (75%), Positives = 77/86 (88%)
Frame = -1
Query: 529 VAAQEAERAKFVVEKAAPDQRSAVIRAPGEAQSAPLIGPAIAHNPAFITLRRIEAAREIA 350
VAAQEAERAKF+VEKA D+RSAVIRA GEA+SA LIG AIA+N AFITLR+IEAAREIA
Sbjct: 199 VAAQEAERAKFIVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNQAFITLRKIEAAREIA 258
Query: 349 HTISNSAHQVYLNSDDLLLDLQGLKL 272
TI++SA++VYL+SDDLLL+LQ + L
Sbjct: 259 QTIAHSANKVYLSSDDLLLNLQEMNL 284
>ref|NP_171882.1| putative prohibitin 2; protein id: At1g03860.1, supported by cDNA:
6208., supported by cDNA: gi_13878108, supported by
cDNA: gi_17104774, supported by cDNA: gi_4097689,
supported by cDNA: gi_4099800 [Arabidopsis thaliana]
gi|25314487|pir||C86169 prohibitin 2 [imported] -
Arabidopsis thaliana gi|4097690|gb|AAD00156.1|
prohibitin 2 gi|4099801|gb|AAD09244.1| prohibitin-like
protein [Arabidopsis thaliana] gi|4204301|gb|AAD10682.1|
prohibitin 2 [Arabidopsis thaliana]
gi|13878109|gb|AAK44132.1|AF370317_1 putative prohibitin
2 protein [Arabidopsis thaliana]
gi|17104775|gb|AAL34276.1| putative prohibitin 2 protein
[Arabidopsis thaliana]
Length = 286
Score = 121 bits (303), Expect = 6e-27
Identities = 65/88 (73%), Positives = 77/88 (86%)
Frame = -1
Query: 529 VAAQEAERAKFVVEKAAPDQRSAVIRAPGEAQSAPLIGPAIAHNPAFITLRRIEAAREIA 350
VAAQEAERAKF+VEKA D+RSAVIRA GEA+SA LIG AIA+N AFITLR+IEAAREIA
Sbjct: 197 VAAQEAERAKFIVEKAEQDRRSAVIRAQGEAKSAQLIGQAIANNQAFITLRKIEAAREIA 256
Query: 349 HTISNSAHQVYLNSDDLLLDLQGLKLGP 266
TI+ SA++VYL+S+DLLL+LQ + L P
Sbjct: 257 QTIAQSANKVYLSSNDLLLNLQEMNLEP 284
>gb|AAF68384.1|AF236368_1 prohibitin [Zea mays]
Length = 289
Score = 120 bits (300), Expect = 1e-26
Identities = 63/92 (68%), Positives = 79/92 (85%)
Frame = -1
Query: 529 VAAQEAERAKFVVEKAAPDQRSAVIRAPGEAQSAPLIGPAIAHNPAFITLRRIEAAREIA 350
VAAQEAERAKF+VEKA D+RSA+IRA GEA+SA LIG AIA+NPAF+ LR+IEAAREI+
Sbjct: 198 VAAQEAERAKFIVEKAEQDKRSAIIRAQGEAKSAELIGQAIANNPAFLALRQIEAAREIS 257
Query: 349 HTISNSAHQVYLNSDDLLLDLQGLKLGPVGKR 254
HTIS SA++V+L+S+DLLL+LQ L + K+
Sbjct: 258 HTISASANKVFLDSNDLLLNLQQLNVSSKQKK 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,535,166
Number of Sequences: 1393205
Number of extensions: 9465846
Number of successful extensions: 28194
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 26892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28012
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
