Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018401A_C01 KMC018401A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL82519.1|AC084766_5 putative transmembrane protein [Oryza s... 96 2e-19
ref|NP_178428.1| putative Golgi-associated membrane trafficking ... 96 3e-19
dbj|BAC43132.1| unknown protein [Arabidopsis thaliana] gi|283729... 95 6e-19
ref|NP_564256.1| expressed protein; protein id: At1g26690.1, sup... 95 6e-19
gb|AAM67291.1| unknown [Arabidopsis thaliana] 95 6e-19
>gb|AAL82519.1|AC084766_5 putative transmembrane protein [Oryza sativa]
Length = 232
Score = 96.3 bits (238), Expect = 2e-19
Identities = 44/58 (75%), Positives = 49/58 (83%)
Frame = -2
Query: 531 IHEEMFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 358
IHEEMFYLR REEEMQ LN+ TNS+M GF S+ +CLSVAG+QLWHLK FFERKKLL
Sbjct: 175 IHEEMFYLRAREEEMQELNRRTNSRMAWLGFFSLAICLSVAGLQLWHLKNFFERKKLL 232
>ref|NP_178428.1| putative Golgi-associated membrane trafficking protein; protein id:
At2g03290.1 [Arabidopsis thaliana]
gi|7487150|pir||T02697 hypothetical protein At2g03290
[imported] - Arabidopsis thaliana
gi|4335768|gb|AAD17445.1| putative Golgi-associated
membrane trafficking protein [Arabidopsis thaliana]
gi|20197345|gb|AAM15035.1| putative Golgi-associated
membrane trafficking protein [Arabidopsis thaliana]
Length = 213
Score = 95.9 bits (237), Expect = 3e-19
Identities = 44/58 (75%), Positives = 51/58 (87%)
Frame = -2
Query: 531 IHEEMFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 358
IHEEM+YLREREEEMQ LN++TNSKM F S+VVCLSVAG+Q WHLKTFFE+KKL+
Sbjct: 156 IHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKTFFEKKKLI 213
>dbj|BAC43132.1| unknown protein [Arabidopsis thaliana] gi|28372958|gb|AAO39961.1|
At1g26690 [Arabidopsis thaliana]
Length = 165
Score = 94.7 bits (234), Expect = 6e-19
Identities = 45/58 (77%), Positives = 50/58 (85%)
Frame = -2
Query: 531 IHEEMFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 358
IHEEMFYLREREEEMQNLN+ATNSKM FLS+ VCL VAGMQ HLKTFFE+KK++
Sbjct: 108 IHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 165
>ref|NP_564256.1| expressed protein; protein id: At1g26690.1, supported by cDNA:
117183. [Arabidopsis thaliana]
gi|9295740|gb|AAF87046.1|AC006535_24 T24P13.7
[Arabidopsis thaliana]
Length = 214
Score = 94.7 bits (234), Expect = 6e-19
Identities = 45/58 (77%), Positives = 50/58 (85%)
Frame = -2
Query: 531 IHEEMFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 358
IHEEMFYLREREEEMQNLN+ATNSKM FLS+ VCL VAGMQ HLKTFFE+KK++
Sbjct: 157 IHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214
>gb|AAM67291.1| unknown [Arabidopsis thaliana]
Length = 214
Score = 94.7 bits (234), Expect = 6e-19
Identities = 45/58 (77%), Positives = 50/58 (85%)
Frame = -2
Query: 531 IHEEMFYLREREEEMQNLNKATNSKMFTFGFLSIVVCLSVAGMQLWHLKTFFERKKLL 358
IHEEMFYLREREEEMQNLN+ATNSKM FLS+ VCL VAGMQ HLKTFFE+KK++
Sbjct: 157 IHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFVCLGVAGMQFVHLKTFFEKKKVI 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,158,210
Number of Sequences: 1393205
Number of extensions: 8028285
Number of successful extensions: 20016
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 19172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19982
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
