Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018341A_C01 KMC018341A_c01
(391 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_714288.1| hypothetical protein [Leptospira interrogans se... 31 4.3
ref|NP_345176.1| tRNA isopentenylpyrophosphate transferase [Stre... 30 9.6
>ref|NP_714288.1| hypothetical protein [Leptospira interrogans serovar lai str.
56601] gi|24198172|gb|AAN51306.1|AE011564_8 hypothetical
protein [Leptospira interrogans serovar lai str. 56601]
Length = 228
Score = 30.8 bits (68), Expect = 4.3
Identities = 19/51 (37%), Positives = 24/51 (46%), Gaps = 2/51 (3%)
Frame = -3
Query: 245 LIGLSYL*GYPYL--KE*FW*NKVVVYVRFFNKKTTSSKLEPPRQMNDIYC 99
L+G Y YP K+ F+ +K +Y RF K T KLE N YC
Sbjct: 142 LVGAEYFIPYPINSNKDGFYYHKFTLYNRFSKKPTRFFKLEKSSTTNQEYC 192
>ref|NP_345176.1| tRNA isopentenylpyrophosphate transferase [Streptococcus pneumoniae
TIGR4] gi|21263780|sp|Q97RW5|MIAA_STRPN tRNA
delta(2)-isopentenylpyrophosphate transferase (IPP
transferase) (Isopentenyl-diphosphate:tRNA
isopentenyltransferase) (IPTase) (IPPT)
gi|25324125|pir||G95077 tRNA isopentenylpyrophosphate
transferase [imported] - Streptococcus pneumoniae
(strain TIGR4) gi|14972146|gb|AAK74816.1| tRNA
isopentenylpyrophosphate transferase [Streptococcus
pneumoniae TIGR4]
Length = 294
Score = 29.6 bits (65), Expect = 9.6
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = -3
Query: 359 AESIATSTRRKLKNKLSWFNNFA*VVFY 276
+ES+ +TRR K +L+WF N V FY
Sbjct: 246 SESLKQATRRFAKRQLTWFRNRMQVTFY 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,218,198
Number of Sequences: 1393205
Number of extensions: 5002870
Number of successful extensions: 9606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9604
length of database: 448,689,247
effective HSP length: 105
effective length of database: 302,402,722
effective search space used: 7257665328
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
