Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018289A_C01 KMC018289A_c01
(354 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF61443.1|AF139187_1 root border cell-specific protein [Pisu... 159 6e-39
ref|NP_683528.1| auxin-regulated protein; protein id: At3g03890.... 93 1e-18
ref|NP_566216.1| auxin-regulated protein; protein id: At3g03890.... 93 1e-18
gb|AAF00629.1|AC009540_6 unknown protein [Arabidopsis thaliana] 91 4e-18
ref|NP_491571.1| Predicted CDS, putative endoplasmic reticulum p... 37 0.083
>gb|AAF61443.1|AF139187_1 root border cell-specific protein [Pisum sativum]
Length = 325
Score = 159 bits (403), Expect = 6e-39
Identities = 85/120 (70%), Positives = 98/120 (80%), Gaps = 2/120 (1%)
Frame = +1
Query: 1 TPLMRISPSFRQNAHKALPFSP-TRHSSSPNSFTFISAIPTLSISMAASSQSTAPAVPSG 177
TPL R+S FR NAH ALPFSP +R+ S PN FTF S S+SMAASSQSTAP SG
Sbjct: 6 TPLTRVSTFFRSNAHNALPFSPKSRNPSLPNFFTFTSP----SLSMAASSQSTAPVASSG 61
Query: 178 DVGMKKDEVFQLIQAHQEKAARLPPVEQVRTVLDHSLRGVLSTFS-KYEGYPSGSMVDFA 354
DV ++KD++FQLIQAHQEKAARLPP+E++RTVLD S+RG LSTFS KY+GYPSGSMVDFA
Sbjct: 62 DVNIEKDDIFQLIQAHQEKAARLPPLEEIRTVLDLSVRGTLSTFSKKYDGYPSGSMVDFA 121
>ref|NP_683528.1| auxin-regulated protein; protein id: At3g03890.2, supported by
cDNA: gi_14190432, supported by cDNA: gi_15450554
[Arabidopsis thaliana]
gi|14190433|gb|AAK55697.1|AF378894_1 AT3g03890/F20H23_6
[Arabidopsis thaliana] gi|15450555|gb|AAK96455.1|
AT3g03890/F20H23_6 [Arabidopsis thaliana]
Length = 305
Score = 92.8 bits (229), Expect = 1e-18
Identities = 53/96 (55%), Positives = 73/96 (75%), Gaps = 2/96 (2%)
Frame = +1
Query: 73 HSSSPNSFTFISAIPTLS-ISMAASSQSTAPAVPSGDVGMKKDEVFQLIQAHQEKAARLP 249
H +S ++ +F + S ++MA+++QS++ AV G G +VF+LIQAH+EKAARL
Sbjct: 24 HRASISAVSFSTVRRRFSPLTMASAAQSSSQAVSYGS-GNSDTDVFKLIQAHEEKAARLS 82
Query: 250 PVEQVRTVLDHSLRGVLSTFS-KYEGYPSGSMVDFA 354
PVE++RTVL+ S+ G+LSTFS KYEGYPSGSMVDFA
Sbjct: 83 PVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFA 118
>ref|NP_566216.1| auxin-regulated protein; protein id: At3g03890.1, supported by
cDNA: 18355. [Arabidopsis thaliana]
gi|21553937|gb|AAM63018.1| unknown [Arabidopsis
thaliana]
Length = 321
Score = 92.8 bits (229), Expect = 1e-18
Identities = 53/96 (55%), Positives = 73/96 (75%), Gaps = 2/96 (2%)
Frame = +1
Query: 73 HSSSPNSFTFISAIPTLS-ISMAASSQSTAPAVPSGDVGMKKDEVFQLIQAHQEKAARLP 249
H +S ++ +F + S ++MA+++QS++ AV G G +VF+LIQAH+EKAARL
Sbjct: 24 HRASISAVSFSTVRRRFSPLTMASAAQSSSQAVSYGS-GNSDTDVFKLIQAHEEKAARLS 82
Query: 250 PVEQVRTVLDHSLRGVLSTFS-KYEGYPSGSMVDFA 354
PVE++RTVL+ S+ G+LSTFS KYEGYPSGSMVDFA
Sbjct: 83 PVEEIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFA 118
>gb|AAF00629.1|AC009540_6 unknown protein [Arabidopsis thaliana]
Length = 201
Score = 90.9 bits (224), Expect = 4e-18
Identities = 49/75 (65%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
Frame = +1
Query: 133 MAASSQSTAPAVPSGDVGMKKDEVFQLIQAHQEKAARLPPVEQVRTVLDHSLRGVLSTFS 312
MA+++QS++ AV G G +VF+LIQAH+EKAARL PVE++RTVL+ S+ G+LSTFS
Sbjct: 1 MASAAQSSSQAVSYGS-GNSDTDVFKLIQAHEEKAARLSPVEEIRTVLNGSICGMLSTFS 59
Query: 313 -KYEGYPSGSMVDFA 354
KYEGYPSGSMVDFA
Sbjct: 60 QKYEGYPSGSMVDFA 74
>ref|NP_491571.1| Predicted CDS, putative endoplasmic reticulum protein family
member, nematode specific [Caenorhabditis elegans]
gi|7504243|pir||T15188 hypothetical protein F55A12.6 -
Caenorhabditis elegans gi|2088666|gb|AAB54124.1|
Hypothetical protein F55A12.6 [Caenorhabditis elegans]
Length = 448
Score = 36.6 bits (83), Expect = 0.083
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = -1
Query: 279 IKDSSNLFNRWKSSSFFLMRLN*LKNFIFF--HANITRGHSRSGGLGRSGHGNGKSGNGG 106
+K + +LF++ K+ LK F FF ++ RG R GG R G G G G GG
Sbjct: 254 LKPNVSLFSQTKT----------LKEFFFFSVESDAQRGGGRGGGGSRGGGGRGGGGRGG 303
Query: 105 DEGEG 91
G G
Sbjct: 304 GGGRG 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,152,071
Number of Sequences: 1393205
Number of extensions: 8015448
Number of successful extensions: 65171
Number of sequences better than 10.0: 324
Number of HSP's better than 10.0 without gapping: 37985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59777
length of database: 448,689,247
effective HSP length: 93
effective length of database: 319,121,182
effective search space used: 7658908368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
