Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018288A_C01 KMC018288A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174246.1| hypothetical protein; protein id: At1g29530.1 [... 38 0.074
gb|AAM65758.1| unknown [Arabidopsis thaliana] 35 0.48
gb|AAL36235.1| unknown protein [Arabidopsis thaliana] gi|2841665... 34 1.1
pir||T14807 hypothetical protein F15J5.40 - Arabidopsis thaliana... 34 1.1
ref|NP_567549.1| putative protein; protein id: At4g18070.1, supp... 34 1.1
>ref|NP_174246.1| hypothetical protein; protein id: At1g29530.1 [Arabidopsis
thaliana] gi|25518441|pir||C86418 hypothetical protein
F15D2.11 [imported] - Arabidopsis thaliana
gi|12323519|gb|AAG51731.1|AC068667_10 hypothetical
protein; 69078-67980 [Arabidopsis thaliana]
Length = 245
Score = 38.1 bits (87), Expect = 0.074
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = -3
Query: 458 ESARETFQP-SPNVPLAESTSPVEQDKTEEPRSTENPIIVSVAQRQHTSWNSCCGLFEIL 282
ES R++ P SP LAES++ ++ P P +V + TSW SCCGLF+ +
Sbjct: 192 ESVRKSEVPVSPEEKLAESSACMQ------PLLLPGPPVV-----RRTSWLSCCGLFDAM 240
Query: 281 RGDDR 267
G DR
Sbjct: 241 TGSDR 245
>gb|AAM65758.1| unknown [Arabidopsis thaliana]
Length = 228
Score = 35.4 bits (80), Expect = 0.48
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Frame = -3
Query: 461 YESARETFQPSPNVPLAES---TSPVEQDKTEEPRSTENPIIVSVAQR-----------Q 324
++ R+T + + + E+ TSP+++ + E+ +++S + +
Sbjct: 150 FDGIRQTSSGATDSDVKENEGKTSPLQESNGVPEGNIESNVVISHEEEAPILIPTHGIAK 209
Query: 323 HTSWNSCCGLFEILRGDDR 267
TSW SCCGLF+++ G R
Sbjct: 210 RTSWFSCCGLFDVVTGSSR 228
>gb|AAL36235.1| unknown protein [Arabidopsis thaliana] gi|28416651|gb|AAO42856.1|
At4g18070 [Arabidopsis thaliana]
Length = 262
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -3
Query: 419 PLAESTSPVE---QDKTEEPRSTENPIIV---SVAQRQHTSWNSCCGLFEILRGDDR 267
PL ES E + E PI++ +A+R TSW SCCGLF+++ G R
Sbjct: 208 PLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKR--TSWFSCCGLFDVVTGSSR 262
>pir||T14807 hypothetical protein F15J5.40 - Arabidopsis thaliana
gi|5816993|emb|CAB53648.1| putative protein [Arabidopsis
thaliana] gi|7268559|emb|CAB78809.1| putative protein
[Arabidopsis thaliana]
Length = 262
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -3
Query: 419 PLAESTSPVE---QDKTEEPRSTENPIIV---SVAQRQHTSWNSCCGLFEILRGDDR 267
PL ES E + E PI++ +A+R TSW SCCGLF+++ G R
Sbjct: 208 PLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKR--TSWFSCCGLFDVVTGSSR 262
>ref|NP_567549.1| putative protein; protein id: At4g18070.1, supported by cDNA: 4345.
[Arabidopsis thaliana]
Length = 228
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -3
Query: 419 PLAESTSPVE---QDKTEEPRSTENPIIV---SVAQRQHTSWNSCCGLFEILRGDDR 267
PL ES E + E PI++ +A+R TSW SCCGLF+++ G R
Sbjct: 174 PLPESNGVPEGNIESNVVISHEEEAPILIPTHGIAKR--TSWFSCCGLFDVVTGSSR 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,082,199
Number of Sequences: 1393205
Number of extensions: 9241542
Number of successful extensions: 24687
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 23220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24577
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
