Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018273A_C01 KMC018273A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF08537.1|AF191098_1 nucleoside diphosphate kinase [Pisum sa... 218 3e-56
gb|AAL91136.1| nucleoside diphosphate kinase III [Spinacia olera... 216 1e-55
gb|AAM65336.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidop... 215 3e-55
ref|NP_567690.1| expressed protein; protein id: At4g23900.1, sup... 215 3e-55
dbj|BAA96460.1| nucleoside diphosphate kinase 3 [Brassica rapa] 214 5e-55
>gb|AAF08537.1|AF191098_1 nucleoside diphosphate kinase [Pisum sativum]
Length = 233
Score = 218 bits (556), Expect = 3e-56
Identities = 101/109 (92%), Positives = 107/109 (97%)
Frame = -3
Query: 565 EFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIR 386
+FAQ+HYHDLKERPFFNGLC+FLSSGPVIAMVWEGEGVITYGRKLIGATDPQKS PGTIR
Sbjct: 125 QFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIR 184
Query: 385 GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 239
GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELV+FTSN+EKW+YG N
Sbjct: 185 GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYGDN 233
>gb|AAL91136.1| nucleoside diphosphate kinase III [Spinacia oleracea]
Length = 235
Score = 216 bits (551), Expect = 1e-55
Identities = 99/109 (90%), Positives = 105/109 (95%)
Frame = -3
Query: 565 EFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIR 386
+FAQKHYHDL ERPFFNGLC+FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKS+PGTIR
Sbjct: 127 DFAQKHYHDLSERPFFNGLCDFLSSGPVVAMVWEGEGVIKYGRKLIGATDPQKSEPGTIR 186
Query: 385 GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 239
GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVN+T NAEKW+YG N
Sbjct: 187 GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNYTHNAEKWIYGDN 235
>gb|AAM65336.1| nucleoside diphosphate kinase 3 (ndpk3) [Arabidopsis thaliana]
Length = 237
Score = 215 bits (548), Expect = 3e-55
Identities = 99/108 (91%), Positives = 104/108 (95%)
Frame = -3
Query: 562 FAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIRG 383
FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKS+PGTIRG
Sbjct: 130 FAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRG 189
Query: 382 DLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 239
DLAVVVGRNIIHGSDGPETAKDEI LWFKPEELV++TSNAEKW+YG N
Sbjct: 190 DLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 237
>ref|NP_567690.1| expressed protein; protein id: At4g23900.1, supported by cDNA:
38500. [Arabidopsis thaliana] gi|7434630|pir||T08909
hypothetical protein T32A16.70 - Arabidopsis thaliana
gi|4972094|emb|CAB43890.1| hypothetical protein
[Arabidopsis thaliana] gi|7269239|emb|CAB81308.1|
hypothetical protein [Arabidopsis thaliana]
gi|11990430|dbj|BAB19789.1| nucleoside diphosphate
kinase 4 [Arabidopsis thaliana]
gi|26450853|dbj|BAC42534.1| unknown protein [Arabidopsis
thaliana]
Length = 237
Score = 215 bits (548), Expect = 3e-55
Identities = 99/108 (91%), Positives = 104/108 (95%)
Frame = -3
Query: 562 FAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIRG 383
FAQKHYHDLKERPFFNGLC FLSSGPV+AMVWEGEGVI YGRKLIGATDPQKS+PGTIRG
Sbjct: 130 FAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRG 189
Query: 382 DLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 239
DLAVVVGRNIIHGSDGPETAKDEI LWFKPEELV++TSNAEKW+YG N
Sbjct: 190 DLAVVVGRNIIHGSDGPETAKDEISLWFKPEELVSYTSNAEKWIYGQN 237
>dbj|BAA96460.1| nucleoside diphosphate kinase 3 [Brassica rapa]
Length = 194
Score = 214 bits (546), Expect = 5e-55
Identities = 98/109 (89%), Positives = 106/109 (96%)
Frame = -3
Query: 565 EFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSQPGTIR 386
+FAQKHYHDLKERPFFNGLC+FLSSGPVIAMVWEGEGVI YGRKLIGATDPQKS+PGTIR
Sbjct: 86 DFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGVIRYGRKLIGATDPQKSEPGTIR 145
Query: 385 GDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVNFTSNAEKWVYGVN 239
GDLAVVVGRNIIHGSDGPETAKDEI LWFKP+ELV++T+NAEKW+YG N
Sbjct: 146 GDLAVVVGRNIIHGSDGPETAKDEINLWFKPQELVSYTNNAEKWIYGDN 194
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,505,541
Number of Sequences: 1393205
Number of extensions: 11116292
Number of successful extensions: 27194
Number of sequences better than 10.0: 322
Number of HSP's better than 10.0 without gapping: 26433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27130
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
