Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018227A_C01 KMC018227A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E86183 hypothetical protein [imported] - Arabidopsis thalia... 81 6e-15
ref|NP_171991.1| unknown protein; protein id: At1g04985.1 [Arabi... 81 6e-15
ref|XP_116086.3| hypothetical protein XP_116086 [Homo sapiens] 34 0.86
pir||S72880 hypothetical protein B2126_F3_142 - Mycobacterium le... 32 4.2
ref|NP_791922.1| helicase/SNF2 family domain protein [Pseudomona... 31 7.2
>pir||E86183 hypothetical protein [imported] - Arabidopsis thaliana
gi|7211991|gb|AAF40462.1|AC004809_20 ESTs gb|T76891 and
gb|T21582 come from this gene. [Arabidopsis thaliana]
Length = 198
Score = 81.3 bits (199), Expect = 6e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = -3
Query: 508 GLGWRGGIWYATKKFRREQMKVLGQIKPRRWQLLGKIKPREW 383
GLGWRGGIWYA +KFRREQM++ GQ+KPR W+LLG+IKPR W
Sbjct: 129 GLGWRGGIWYANRKFRREQMRLAGQLKPREWKLLGRIKPRAW 170
>ref|NP_171991.1| unknown protein; protein id: At1g04985.1 [Arabidopsis thaliana]
gi|27754677|gb|AAO22782.1| unknown protein [Arabidopsis
thaliana] gi|28393999|gb|AAO42407.1| unknown protein
[Arabidopsis thaliana]
Length = 193
Score = 81.3 bits (199), Expect = 6e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = -3
Query: 508 GLGWRGGIWYATKKFRREQMKVLGQIKPRRWQLLGKIKPREW 383
GLGWRGGIWYA +KFRREQM++ GQ+KPR W+LLG+IKPR W
Sbjct: 124 GLGWRGGIWYANRKFRREQMRLAGQLKPREWKLLGRIKPRAW 165
>ref|XP_116086.3| hypothetical protein XP_116086 [Homo sapiens]
Length = 660
Score = 34.3 bits (77), Expect = 0.86
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = +3
Query: 348 CHPLGFIFPSNCHSLGFIFPSNCHLLGLICP 440
CHP + PS CH L + PS CH + P
Sbjct: 334 CHPPTSVTPSQCHPLSSVTPSQCHPPSSVIP 364
Score = 33.5 bits (75), Expect = 1.5
Identities = 11/24 (45%), Positives = 13/24 (53%)
Frame = +3
Query: 348 CHPLGFIFPSNCHSLGFIFPSNCH 419
CHPL + PS CH + P CH
Sbjct: 345 CHPLSSVTPSQCHPPSSVIPHQCH 368
>pir||S72880 hypothetical protein B2126_F3_142 - Mycobacterium leprae
gi|467035|gb|AAA17220.1| B2126_F3_142 [Mycobacterium
leprae]
Length = 298
Score = 32.0 bits (71), Expect = 4.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 357 LGFIFPSNCHSLGFIFPSNCHLLGLICPST 446
+G + P H G IF S HLL ++CP T
Sbjct: 1 MGVVRPLGGHPQGVIFDSGSHLLAVLCPGT 30
>ref|NP_791922.1| helicase/SNF2 family domain protein [Pseudomonas syringae pv.
tomato str. DC3000] gi|28852544|gb|AAO55617.1|
helicase/SNF2 family domain protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 918
Score = 31.2 bits (69), Expect = 7.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 323 YKIQSTRYCSKNI*NDCKGCIYPTYYWKIPLTRPLL 216
YK T C+ + NDCK C+ + K P RPLL
Sbjct: 68 YKNYLTCKCTCPVRNDCKHCVAALLFLKDPQNRPLL 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,208,253
Number of Sequences: 1393205
Number of extensions: 9927094
Number of successful extensions: 22487
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22443
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
