Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018168A_C01 KMC018168A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566620.1| expressed protein; protein id: At3g18860.1, sup... 74 1e-12
emb|CAD53216.1| hypothetical protein [Trypanosoma brucei] 40 0.027
gb|EAA23806.1| hypothetical protein [Fusobacterium nucleatum sub... 35 0.66
ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.86
gb|AAM18750.1|AC099325_6 putative gag-pol polyprotein [Oryza sat... 32 4.3
>ref|NP_566620.1| expressed protein; protein id: At3g18860.1, supported by cDNA:
gi_15294239 [Arabidopsis thaliana]
gi|9294695|dbj|BAB03095.1|
emb|CAB63739.1~gene_id:MCB22.3~similar to unknown
protein [Arabidopsis thaliana]
gi|15294240|gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3
[Arabidopsis thaliana]
Length = 760
Score = 74.3 bits (181), Expect = 1e-12
Identities = 37/50 (74%), Positives = 46/50 (92%)
Frame = -2
Query: 570 AFVAVGSLMLEGLVKKIALDFDVLNIAKAAKGSKEAQIAEVGADIELLTK 421
+ VA+GSLMLEGLVKKIA+DFDV +IAK+AK SKEA+IAEVGADI+L+ +
Sbjct: 710 SLVAIGSLMLEGLVKKIAIDFDVESIAKSAKASKEAKIAEVGADIDLVIR 759
>emb|CAD53216.1| hypothetical protein [Trypanosoma brucei]
Length = 120
Score = 39.7 bits (91), Expect = 0.027
Identities = 21/64 (32%), Positives = 35/64 (53%)
Frame = -3
Query: 194 IFRSLCQILSYIEFSFLFEILFDTIIFWVQDDYVYARIYTIIRFELSSSFILMVKVFLVK 15
+F S C +I F FLF ILF ++FW ++ R + + L+ + + V++ +K
Sbjct: 1 MFLSWCAFFRFIAF-FLFVILFSYLLFWPLIFFLPFRFFLLFFCSLAFNLLFTVRIVSLK 59
Query: 14 KKKK 3
KKKK
Sbjct: 60 KKKK 63
>gb|EAA23806.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 272
Score = 35.0 bits (79), Expect = 0.66
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = -3
Query: 239 SSLEMEFFYAVYSIMIFRSLCQILSYIEFSFLFEILFDTIIFWVQDDYVYARIYTIIRFE 60
SSL + FF Y + +IL ++ F +++ ++F +++D Y + YT+I F
Sbjct: 69 SSLILNFFLINYFYYLGEKYIEILLFLSLLLFFILVYSFLLFLIEEDLFYFK-YTLISFS 127
Query: 59 LSSSFILMVKVFLVKKKKK 3
F++ + V ++ KK+
Sbjct: 128 Y-LLFLIYLTVPIIPPKKE 145
>ref|NP_704861.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505224|emb|CAD52004.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1342
Score = 34.7 bits (78), Expect = 0.86
Identities = 18/49 (36%), Positives = 29/49 (58%)
Frame = -3
Query: 149 FLFEILFDTIIFWVQDDYVYARIYTIIRFELSSSFILMVKVFLVKKKKK 3
+ FEIL + + F + DDY Y Y II + ++I +V +F ++KKK
Sbjct: 128 YFFEILVNLLEFNICDDYDYLLFYIIILYINDYNYIDLVHIFNNEEKKK 176
>gb|AAM18750.1|AC099325_6 putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 843
Score = 32.3 bits (72), Expect = 4.3
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)
Frame = +1
Query: 16 FTKKTFTINIKDELNSNLMIVYMRAYT*SSWTQKIIV---SNRISNRNENSIYERIWHKD 186
F T+ +N S + ++ S W K+ S +S +S+Y ++ +
Sbjct: 121 FIDSTYDVNYTQ---SKVSHYFLSGLDMSIWEMKVTSIQESVDMSTLTLDSLYTKLKTYE 177
Query: 187 LKIMMLYTA*KNSI---SKELCIRCFDLSPQIQNAQNNKNGTRVHVFDCGSVT*AWAFLF 357
+ I+ K+S ++L + +S I N + K G H F+CG++ +
Sbjct: 178 MNILSRKVDPKSSALFEEEDLALAANKISRAINNVRYRKRGGSTHCFECGALDHIRS--H 235
Query: 358 CPSFYLGERKRLITQKELDSAL 423
CP+ + G+++ +K D+ L
Sbjct: 236 CPNLWRGKKEDNGGEKTKDNKL 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,577,235
Number of Sequences: 1393205
Number of extensions: 11157135
Number of successful extensions: 30685
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 29720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30657
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
