Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018145A_C01 KMC018145A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA96382.1| NADH dehydrogenase subunit 2 [Euhadra herklotsi] 32 3.8
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 32 3.8
ref|NP_346523.1| hypothetical protein [Streptococcus pneumoniae ... 31 8.5
ref|NP_651842.3| CG11318-PA [Drosophila melanogaster] gi|1794525... 31 8.5
ref|NP_700614.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.5
>emb|CAA96382.1| NADH dehydrogenase subunit 2 [Euhadra herklotsi]
Length = 309
Score = 32.3 bits (72), Expect = 3.8
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Frame = -1
Query: 397 ALYRAMLDVLAFLQKMI----------LREESLAFGRDCYLYNVKSSCFNSVFVVVLESR 248
ALY+A+L L++L M+ L ++ FG+ L + SS VFVVV
Sbjct: 203 ALYKALLWCLSYLSSMLNSLSFFGMSGLPPFAVFFGKVLVLSKLCSSMDIIVFVVVALLT 262
Query: 247 QASELYYILKY 215
A L+Y LKY
Sbjct: 263 SAFSLFYYLKY 273
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 32.3 bits (72), Expect = 3.8
Identities = 27/116 (23%), Positives = 50/116 (42%), Gaps = 15/116 (12%)
Frame = -3
Query: 311 LFI*C*IILFQ*CFRSRVGVEAGF*TLLYFKVWLRKSKLELVLSTCYLACLSFFLLIMLL 132
LF+ C + LF C S + L+ ++ S L+L L CY+ FFL + +
Sbjct: 37 LFLPCFVCLFLPCIMSNSLL------YLFLPCFVSISSLQLCLILCYIY---FFLALCVY 87
Query: 131 TSIAVCFS*CRLHDF---------------QNHCLLICHVFRYLI*LF*DIMLLLI 9
+A+C C ++ F CL++C+++ +L + +LL +
Sbjct: 88 FFLALCLILCYIYFFLALCVCLPCFVSISSLQLCLILCYIYFFLAFVCLSFLLLCV 143
>ref|NP_346523.1| hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15903955|ref|NP_359505.1| Hypothetical protein
[Streptococcus pneumoniae R6] gi|25389581|pir||B95246
hypothetical protein SP2104 [imported] - Streptococcus
pneumoniae (strain TIGR4) gi|25509337|pir||G98110
hypothetical protein spr1914 [imported] - Streptococcus
pneumoniae (strain R6) gi|14973615|gb|AAK76163.1|
hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|15459609|gb|AAL00716.1| Hypothetical protein
[Streptococcus pneumoniae R6]
Length = 68
Score = 31.2 bits (69), Expect = 8.5
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 434 ILFVILTCLHQGNHEL 481
ILFVILTCL+ GNH+L
Sbjct: 17 ILFVILTCLYIGNHDL 32
>ref|NP_651842.3| CG11318-PA [Drosophila melanogaster] gi|17945255|gb|AAL48685.1|
RE14222p [Drosophila melanogaster]
gi|28381514|gb|AAF57115.2| CG11318-PA [Drosophila
melanogaster]
Length = 802
Score = 31.2 bits (69), Expect = 8.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 275 CFRSRVGVEAGF*TLLYFKVWLRKSKLELVLSTCYLACLSFFLLIMLLT 129
C S +G+ F T FK W ++ +++L C CL L + L T
Sbjct: 509 CSLSLLGILGIFLTAALFKSWRSQASTKVLLHLCLAMCLQMMLFVFLNT 557
>ref|NP_700614.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495005|gb|AAN35338.1|AE014831_14 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2379
Score = 31.2 bits (69), Expect = 8.5
Identities = 19/71 (26%), Positives = 33/71 (45%)
Frame = +1
Query: 145 KRKKDKHAK*HVLSTNSSLDFLSHTLKYNKVQKPASTPTRLRKHY*NKMI*HYINNNLFQ 324
KR + HV+S + DF+ +TL Y++ +H N + + N+ L++
Sbjct: 448 KRTPSRFNTNHVISMRAHNDFIYNTLLYHRTNTSICKDKSQGEHIYNNVFNNNNNSKLYE 507
Query: 325 MLSSLLAISSF 357
L SL I +F
Sbjct: 508 SLVSLSNIENF 518
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,052,611
Number of Sequences: 1393205
Number of extensions: 7336893
Number of successful extensions: 15328
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15325
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
