Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018133A_C01 KMC018133A_c01
(442 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86231.1| hypothetical protein~similar to Homo sapiens chr... 62 2e-09
dbj|BAB83612.1| unknown protein [Arabidopsis thaliana] 50 6e-06
ref|XP_109263.2| cDNA sequence BC002236 [Mus musculus] 32 2.3
ref|NP_077795.1| cDNA sequence BC002236; hypothetical protein, M... 32 2.3
dbj|BAC31711.1| unnamed protein product [Mus musculus] gi|263407... 32 2.3
>dbj|BAB86231.1| hypothetical protein~similar to Homo sapiens chromosome 5,
LOC134510 [Oryza sativa (japonica cultivar-group)]
gi|20804762|dbj|BAB92447.1| P0698A10.17 [Oryza sativa
(japonica cultivar-group)]
Length = 350
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/34 (82%), Positives = 31/34 (90%)
Frame = -1
Query: 442 QYLLAIAELDDLSKLNHHNWESFTDENAKRRRHR 341
QYLL IAEL+DLSKL+H WESFT+ENAKRRRHR
Sbjct: 317 QYLLTIAELEDLSKLDHSAWESFTEENAKRRRHR 350
>dbj|BAB83612.1| unknown protein [Arabidopsis thaliana]
Length = 340
Score = 50.1 bits (118), Expect = 6e-06
Identities = 22/32 (68%), Positives = 25/32 (77%)
Frame = -1
Query: 442 QYLLAIAELDDLSKLNHHNWESFTDENAKRRR 347
QYLL IAEL DLS L+H WESF+ +N KRRR
Sbjct: 307 QYLLTIAELSDLSSLHHSRWESFSQDNVKRRR 338
>ref|XP_109263.2| cDNA sequence BC002236 [Mus musculus]
Length = 109
Score = 31.6 bits (70), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 442 QYLLAIAELDDLSKLNHHNWESF 374
QYL IA+LDD +LNH WE +
Sbjct: 80 QYLKEIAKLDDFLELNHKYWERY 102
>ref|NP_077795.1| cDNA sequence BC002236; hypothetical protein, MGC: 7513 [Mus
musculus] gi|12805519|gb|AAH02236.1| Unknown (protein
for MGC:7513) [Mus musculus]
Length = 103
Score = 31.6 bits (70), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 442 QYLLAIAELDDLSKLNHHNWESF 374
QYL IA+LDD +LNH WE +
Sbjct: 74 QYLKEIAKLDDFLELNHKYWERY 96
>dbj|BAC31711.1| unnamed protein product [Mus musculus] gi|26340754|dbj|BAC34039.1|
unnamed protein product [Mus musculus]
Length = 318
Score = 31.6 bits (70), Expect = 2.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 442 QYLLAIAELDDLSKLNHHNWESF 374
QYL IA+LDD +LNH WE +
Sbjct: 289 QYLKEIAKLDDFLELNHKYWERY 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,368,638
Number of Sequences: 1393205
Number of extensions: 7153230
Number of successful extensions: 12114
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12113
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
