Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018100A_C01 KMC018100A_c01
(751 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192344.1| putative leucyl tRNA synthetase; protein id: At... 80 3e-14
dbj|BAB17162.1| putative leucyl-tRNA synthetase [Oryza sativa (j... 60 4e-08
gb|ZP_00079919.1| hypothetical protein [Geobacter metallireducens] 42 0.007
sp|Q9KTE6|SYL_VIBCH Leucyl-tRNA synthetase (Leucine--tRNA ligase... 40 0.027
ref|NP_230603.1| leucyl-tRNA synthetase [Vibrio cholerae] gi|112... 40 0.027
>ref|NP_192344.1| putative leucyl tRNA synthetase; protein id: At4g04350.1, supported
by cDNA: gi_19310530 [Arabidopsis thaliana]
gi|25292965|pir||A85055 probable leucyl tRNA synthetase
[imported] - Arabidopsis thaliana
gi|4982478|gb|AAD36946.1|AF069441_6 putative leucyl tRNA
synthetase [Arabidopsis thaliana]
gi|7267192|emb|CAB77903.1| putative leucyl tRNA
synthetase [Arabidopsis thaliana]
gi|19310531|gb|AAL84999.1| AT4g04350/T19B17_7
[Arabidopsis thaliana] gi|25090241|gb|AAN72260.1|
At4g04350/T19B17_7 [Arabidopsis thaliana]
Length = 973
Score = 80.1 bits (196), Expect = 3e-14
Identities = 36/52 (69%), Positives = 46/52 (88%)
Frame = -1
Query: 751 ETCTEEDAFVLASRDEKLSKYLEGQSVRKRIYVRGKILNVVLDRKNIKATVQ 596
E C+E+DAFVLAS+D+KL KYL+GQS++KRIYV GKILNV+LDR N+K T +
Sbjct: 922 EGCSEDDAFVLASQDDKLRKYLDGQSIKKRIYVPGKILNVILDRTNVKVTTK 973
>dbj|BAB17162.1| putative leucyl-tRNA synthetase [Oryza sativa (japonica
cultivar-group)]
Length = 946
Score = 59.7 bits (143), Expect = 4e-08
Identities = 26/39 (66%), Positives = 34/39 (86%)
Frame = -1
Query: 745 CTEEDAFVLASRDEKLSKYLEGQSVRKRIYVRGKILNVV 629
C+E+DAF +A+ DEKLSKYL G+ +RKRIYV G+ILNV+
Sbjct: 906 CSEDDAFQIAASDEKLSKYLTGKGIRKRIYVPGRILNVI 944
>gb|ZP_00079919.1| hypothetical protein [Geobacter metallireducens]
Length = 824
Score = 42.4 bits (98), Expect = 0.007
Identities = 19/39 (48%), Positives = 27/39 (68%)
Frame = -1
Query: 742 TEEDAFVLASRDEKLSKYLEGQSVRKRIYVRGKILNVVL 626
TEE A DEK+ ++EG+ +RK IYV GK+LN+V+
Sbjct: 785 TEEQVKAAAFADEKVKPWIEGKQLRKAIYVPGKLLNIVV 823
>sp|Q9KTE6|SYL_VIBCH Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 858
Score = 40.4 bits (93), Expect = 0.027
Identities = 17/38 (44%), Positives = 27/38 (70%)
Frame = -1
Query: 742 TEEDAFVLASRDEKLSKYLEGQSVRKRIYVRGKILNVV 629
T++ L +DE + K+++G +VRK IYV GK+LN+V
Sbjct: 819 TQQQVEALGMQDENVQKFIDGLTVRKVIYVPGKLLNIV 856
>ref|NP_230603.1| leucyl-tRNA synthetase [Vibrio cholerae] gi|11271159|pir||G82260
leucyl-tRNA synthetase VC0956 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
gi|9655415|gb|AAF94118.1| leucyl-tRNA synthetase [Vibrio
cholerae]
Length = 894
Score = 40.4 bits (93), Expect = 0.027
Identities = 17/38 (44%), Positives = 27/38 (70%)
Frame = -1
Query: 742 TEEDAFVLASRDEKLSKYLEGQSVRKRIYVRGKILNVV 629
T++ L +DE + K+++G +VRK IYV GK+LN+V
Sbjct: 855 TQQQVEALGMQDENVQKFIDGLTVRKVIYVPGKLLNIV 892
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,733,385
Number of Sequences: 1393205
Number of extensions: 13760891
Number of successful extensions: 25733
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 24907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25733
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
