Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018074A_C01 KMC018074A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P27489|CB23_LYCES Chlorophyll A-B binding protein 13, chlorop... 221 8e-57
gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding ... 219 2e-56
pir||S33775 chlorophyll a/b-binding protein - garden pea gi|2067... 219 2e-56
gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus... 219 3e-56
sp|P27523|CB23_HORVU Chlorophyll A-B binding protein of LHCII ty... 216 1e-55
>sp|P27489|CB23_LYCES Chlorophyll A-B binding protein 13, chloroplast precursor (LHCII
type III CAB-13) gi|72748|pir||CDTO33 chlorophyll
a/b-binding protein type III precursor (cab-13) - tomato
gi|19277|emb|CAA42818.1| LHCII type III [Lycopersicon
esculentum]
Length = 265
Score = 221 bits (562), Expect = 8e-57
Identities = 107/114 (93%), Positives = 110/114 (95%)
Frame = -3
Query: 613 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 434
HAQSILAVL F VVLMGLVEGFRINGLPGVGEGN+LYPGG YFDPLGLADDP TFAELKV
Sbjct: 152 HAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKV 211
Query: 433 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 272
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PVANNAWVYATKFVPG+
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265
Score = 33.1 bits (74), Expect = 3.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 514 NNLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 389
N +PG +D GL+ DP FA+ + E+ +GR AM G
Sbjct: 68 NGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 109
>gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 219 bits (558), Expect = 2e-56
Identities = 107/114 (93%), Positives = 108/114 (93%)
Frame = -3
Query: 613 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 434
HAQSILAVL F VVLMGLVEGFRINGL GVGEGNNLYPGG YFDPLGLADDP TFAELKV
Sbjct: 156 HAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKV 215
Query: 433 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 272
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PVANNAWVYATKF PGS
Sbjct: 216 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 269
Score = 32.0 bits (71), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -3
Query: 505 YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 389
+PG +D GL+ DP FA+ + E+ +GR AM G
Sbjct: 75 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 113
>pir||S33775 chlorophyll a/b-binding protein - garden pea
gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein
[Pisum sativum]
Length = 265
Score = 219 bits (558), Expect = 2e-56
Identities = 106/114 (92%), Positives = 110/114 (95%)
Frame = -3
Query: 613 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 434
HAQSILAVL F +VLMGLVEGFRINGLP VGEGN+LYPGG YFDPLGLADDPVTFAELKV
Sbjct: 152 HAQSILAVLGFQIVLMGLVEGFRINGLPDVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 211
Query: 433 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 272
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PVANNAWVYATKFVPG+
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265
Score = 32.0 bits (71), Expect = 6.6
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -3
Query: 505 YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 389
+PG +D GL+ DP FA+ + E+ +GR AM G
Sbjct: 71 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALG 109
>gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 219 bits (557), Expect = 3e-56
Identities = 107/114 (93%), Positives = 109/114 (94%)
Frame = -3
Query: 613 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 434
HAQSILAVL F VVLMGLVE FRINGLPGVGEGN+LYPGG YFDPLGLADDPVT AELKV
Sbjct: 151 HAQSILAVLGFQVVLMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKV 210
Query: 433 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 272
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD+PVANNAWVYATKFVPGS
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 264
Score = 34.3 bits (77), Expect = 1.3
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -3
Query: 505 YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 389
+PG +D GL+ DP FA+ + E+ +GR AM FG
Sbjct: 70 FPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFG 108
>sp|P27523|CB23_HORVU Chlorophyll A-B binding protein of LHCII type III, chloroplast
precursor (CAB) gi|72749|pir||CDBH3 chlorophyll
a/b-binding protein type III precursor - barley
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor
protein [Hordeum vulgare]
Length = 268
Score = 216 bits (551), Expect = 1e-55
Identities = 105/114 (92%), Positives = 108/114 (94%)
Frame = -3
Query: 613 HAQSILAVLAFPVVLMGLVEGFRINGLPGVGEGNNLYPGGPYFDPLGLADDPVTFAELKV 434
HAQSILAVL F V+LMGLVEGFRINGL GVGEGN+LYPGG YFDPLGLADDPVTFAELKV
Sbjct: 155 HAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKV 214
Query: 433 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDDPVANNAWVYATKFVPGS 272
KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLDDPVANNAWV+ATKF PGS
Sbjct: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPGS 268
Score = 32.7 bits (73), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 514 NNLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFG 389
N +PG +D GL+ DP FA + E+ +GR AM G
Sbjct: 71 NGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALG 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,025,530
Number of Sequences: 1393205
Number of extensions: 12078971
Number of successful extensions: 36535
Number of sequences better than 10.0: 418
Number of HSP's better than 10.0 without gapping: 33864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36038
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
