Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018050A_C01 KMC018050A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P16048|GCSH_PEA Glycine cleavage system H protein, mitochondr... 286 1e-76
ref|NP_174525.1| glycine cleavage system H protein precursor, pu... 283 2e-75
pir||S60195 glycine cleavage system protein H precursor (clone H... 278 5e-74
sp|Q39732|GCSH_FLAAN Glycine cleavage system H protein, mitochon... 278 5e-74
emb|CAB16710.1| H protein [Flaveria anomala] 276 2e-73
>sp|P16048|GCSH_PEA Glycine cleavage system H protein, mitochondrial precursor
gi|1070638|pir||GCPMH glycine cleavage system protein H
precursor [validated] - garden pea
gi|20737|emb|CAA45978.1| H protein [Pisum sativum]
gi|169093|gb|AAA33668.1| H-protein of glycine
decarboxylase precursor (EC 2.1.2.10)
gi|287815|emb|CAA37704.1| H-protein [Pisum sativum]
Length = 165
Score = 286 bits (733), Expect = 1e-76
Identities = 141/163 (86%), Positives = 152/163 (92%)
Frame = -3
Query: 694 RMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATIGIT 515
RMWASSTANALKLSSS SRLHLSP FS+SRCFS+VLDGLKYA SHEWVKHEGSVATIGIT
Sbjct: 4 RMWASSTANALKLSSS-SRLHLSPTFSISRCFSNVLDGLKYAPSHEWVKHEGSVATIGIT 62
Query: 514 DHAQDHLGEVVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSEQPG 335
DHAQDHLGEVVFVELPE G VTKG GFGAVESVKATSD+NSPISGE+IEVNT L+ +PG
Sbjct: 63 DHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPG 122
Query: 334 LINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 206
LIN+SPYEDGWMIK+KP+SP EL+SLLG +EYTKFCEEEDAAH
Sbjct: 123 LINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165
>ref|NP_174525.1| glycine cleavage system H protein precursor, putative; protein id:
At1g32470.1, supported by cDNA: 23118., supported by
cDNA: gi_12083337, supported by cDNA: gi_14326571,
supported by cDNA: gi_18700237 [Arabidopsis thaliana]
gi|12644523|sp|Q9LQL0|GCSI_ARATH Probable glycine
cleavage system H protein 2, mitochondrial precursor
gi|25295842|pir||A86450 probable glycine cleavage system
H-protein precursor - Arabidopsis thaliana
gi|8920623|gb|AAF81345.1|AC007767_25 Identical to a
glycine cleavage system H-protein precursor from
Arabidopsis thaliana gb|P25855. It contains a glycine
cleavage H-protein domain PF|01597. ESTs gb|R90208,
gb|AI994794, gb|AA605324, gb|N38240, gb|AV533336,
gb|AV534187, gb|AA597419 and gb|AA597515 come from this
gene gi|12083338|gb|AAG48828.1|AF332465_1 putative
glycine cleavage system H protein precursor [Arabidopsis
thaliana] gi|14326572|gb|AAK60330.1|AF385740_1
At1g32470/F5D14_10 [Arabidopsis thaliana]
gi|18700238|gb|AAL77729.1| At1g32470/F5D14_10
[Arabidopsis thaliana]
Length = 166
Score = 283 bits (724), Expect = 2e-75
Identities = 137/163 (84%), Positives = 152/163 (93%)
Frame = -3
Query: 694 RMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATIGIT 515
RMWASSTANALKLSSSAS+ HL P FS+SRCFSSVL+GLKYA+SHEWVKHEGSVATIGIT
Sbjct: 4 RMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGIT 63
Query: 514 DHAQDHLGEVVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSEQPG 335
DHAQDHLGEVVFVELPE+ V+K FGAVESVKATS+I SPISGE+IEVNTKL+E PG
Sbjct: 64 DHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPG 123
Query: 334 LINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 206
LIN+SPYEDGWMIKVKPSSP+EL++L+GP+EYTKFCEEEDAAH
Sbjct: 124 LINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166
>pir||S60195 glycine cleavage system protein H precursor (clone HFC1) - Flaveria
cronquistii gi|7441692|pir||S60199 glycine cleavage
system protein H precursor (clone HFP20) - Flaveria
pringlei gi|437993|emb|CAA81073.1| H-protein [Flaveria
cronquistii] gi|437999|emb|CAA81074.1| H-protein
[Flaveria pringlei] gi|3688299|emb|CAB16912.1| H-protein
[Flaveria pringlei]
Length = 162
Score = 278 bits (711), Expect = 5e-74
Identities = 139/163 (85%), Positives = 151/163 (92%)
Frame = -3
Query: 694 RMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATIGIT 515
RMWASSTANAL+LSS A+R H SP LSRCFSSVLDGLKYA+SHEWVKHEGSVATIGIT
Sbjct: 4 RMWASSTANALRLSS-ATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIGIT 59
Query: 514 DHAQDHLGEVVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSEQPG 335
DHAQDHLGEVVFV+LPE+G VTK GFGAVESVKATSD+NSPISGEI+EVN+KLSE PG
Sbjct: 60 DHAQDHLGEVVFVDLPETGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPG 119
Query: 334 LINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 206
LIN+SPYEDGWMIKVKPS+PSELDSL+G +EYTKFCEEEDAAH
Sbjct: 120 LINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162
>sp|Q39732|GCSH_FLAAN Glycine cleavage system H protein, mitochondrial precursor
gi|1085826|pir||S49248 glycine cleavage system protein H
precursor - Flaveria anomala gi|547558|emb|CAA85761.1|
H-protein [Flaveria anomala]
Length = 162
Score = 278 bits (711), Expect = 5e-74
Identities = 139/163 (85%), Positives = 151/163 (92%)
Frame = -3
Query: 694 RMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATIGIT 515
RMWASSTANAL+LSS A+R H SP LSRCFSSVLDGLKYA+SHEWVKHEGSVATIGIT
Sbjct: 4 RMWASSTANALRLSS-ATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIGIT 59
Query: 514 DHAQDHLGEVVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSEQPG 335
DHAQDHLGEVVFV+LPE+G VTK GFGAVESVKATSD+NSPISGEI+EVN+KLSE PG
Sbjct: 60 DHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPG 119
Query: 334 LINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 206
LIN+SPYEDGWMIKVKPS+PSELDSL+G +EYTKFCEEEDAAH
Sbjct: 120 LINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162
>emb|CAB16710.1| H protein [Flaveria anomala]
Length = 162
Score = 276 bits (707), Expect = 2e-73
Identities = 138/163 (84%), Positives = 151/163 (91%)
Frame = -3
Query: 694 RMWASSTANALKLSSSASRLHLSPPFSLSRCFSSVLDGLKYASSHEWVKHEGSVATIGIT 515
R+WASSTANAL+LSS A+R H SP LSRCFSSVLDGLKYA+SHEWVKHEGSVATIGIT
Sbjct: 4 RIWASSTANALRLSS-ATRPHFSP---LSRCFSSVLDGLKYANSHEWVKHEGSVATIGIT 59
Query: 514 DHAQDHLGEVVFVELPESGKPVTKGDGFGAVESVKATSDINSPISGEIIEVNTKLSEQPG 335
DHAQDHLGEVVFV+LPE+G VTK GFGAVESVKATSD+NSPISGEI+EVN+KLSE PG
Sbjct: 60 DHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPG 119
Query: 334 LINTSPYEDGWMIKVKPSSPSELDSLLGPQEYTKFCEEEDAAH 206
LIN+SPYEDGWMIKVKPS+PSELDSL+G +EYTKFCEEEDAAH
Sbjct: 120 LINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,754,690
Number of Sequences: 1393205
Number of extensions: 12953471
Number of successful extensions: 44560
Number of sequences better than 10.0: 229
Number of HSP's better than 10.0 without gapping: 42293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44389
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
