Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018034A_C01 KMC018034A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB51525.1| acyl-ACP thioesterase [Garcinia mangostana] 52 5e-06
gb|AAD01982.1| palmitoyl-acyl carrier protein thioesterase [Goss... 40 0.014
sp|Q9SQI3|FATB_GOSHI Myristoyl-acyl carrier protein thioesterase... 40 0.014
gb|AAB71730.1| acyl-ACP thioesterase [Myristica fragrans] 39 0.040
gb|AAC49001.1| Uc FatB2 39 0.052
>gb|AAB51525.1| acyl-ACP thioesterase [Garcinia mangostana]
Length = 406
Score = 52.0 bits (123), Expect = 5e-06
Identities = 20/34 (58%), Positives = 29/34 (84%)
Frame = -2
Query: 536 RLDDGAEIVRGRTEWKPKPVNNFDALNRVPGESA 435
RL+DGAEIVRGRTEW+PK +NNF + ++P +++
Sbjct: 373 RLEDGAEIVRGRTEWRPKYINNFSIMGQIPTDAS 406
>gb|AAD01982.1| palmitoyl-acyl carrier protein thioesterase [Gossypium hirsutum]
Length = 410
Score = 40.4 bits (93), Expect = 0.014
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 536 RLDDGAEIVRGRTEWKPKPVNNFDALNRVPGESA 435
RLDDGAEIVRGRT W+PK + ++++ + A
Sbjct: 377 RLDDGAEIVRGRTRWRPKHAKSSANMDQITAKRA 410
>sp|Q9SQI3|FATB_GOSHI Myristoyl-acyl carrier protein thioesterase, chloroplast precursor
(16:0-acyl-carrier protein thioesterase) (16:0-ACP
thioesterase) (Acyl-[acyl-carrier protein] hydrolase)
(PATE) gi|6048397|gb|AAF02215.1|AF076535_1
palmitoyl-acyl carrier protein thioesterase [Gossypium
hirsutum]
Length = 413
Score = 40.4 bits (93), Expect = 0.014
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = -2
Query: 536 RLDDGAEIVRGRTEWKPKPVNNFDALNRVPGESA 435
RLDDGAEIVRGRT W+PK + ++++ + A
Sbjct: 380 RLDDGAEIVRGRTRWRPKHAKSSANMDQITAKRA 413
>gb|AAB71730.1| acyl-ACP thioesterase [Myristica fragrans]
Length = 362
Score = 38.9 bits (89), Expect = 0.040
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Frame = -2
Query: 536 RLDDGAEIVRGRTEWKPKPVNN---FDALNRVPGESA*IY 426
RL+DG+EI+RG+TEW+PK N F +++ +P IY
Sbjct: 296 RLEDGSEIMRGKTEWRPKRAANTTYFGSVDDIPPHPIYIY 335
>gb|AAC49001.1| Uc FatB2
Length = 383
Score = 38.5 bits (88), Expect = 0.052
Identities = 12/27 (44%), Positives = 24/27 (88%)
Frame = -2
Query: 536 RLDDGAEIVRGRTEWKPKPVNNFDALN 456
+L+DG+E++RGRT+W+PK ++F+ ++
Sbjct: 347 QLEDGSEVLRGRTDWRPKRTDSFEGIS 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,132,070
Number of Sequences: 1393205
Number of extensions: 10516265
Number of successful extensions: 34692
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 33716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34683
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
