KMC018008A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC018008A_C01 KMC018008A_c01
cctgtcagataacagatcattaaagaaaccttggtTGAAATTTTCAACTGATGTACTGAG
GATAGAAGAAAATAATGAACTGTGATAAATGTGAAGTGTCTCTAATAATACCCAATAATT
GTAATTTTTTTTTCTCACCAAAGTAACAAGGCGGGATCCAATTGCACCATGGCTCTTCTA
GGATTTTCTCATCTGGGATTTAGGGGAAGAAAATTAAGCTGACCCTAACAAACAACTTGA
TGCACTATCTTCCTTCAATTCTCTATCTTTGAACTAAATATAGAAAATATAACGAAGCTG
CTATAAACATAAAAGGTCTATCCGGCGCCCACCATGGGCTAGCTTCATTCTCTTTATTTC
CTTTAGTAACAACTGAAAGTTCACATGCATGAGAGATCTTTGGGTAGGAGGACAATATTT
CAACAAGTCGGCGGTGATAGCTATTACAGTAACACATATCGAAACAATGGATTGTCATGA
CCTGTAAAACCCTCGCCTTTTGCAGGATGTATGCTGCAAATCGAAGATCATCT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC018008A_C01 KMC018008A_c01
         (533 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||INKS insulin - casiragua                                          36  0.25
pir||INCU insulin - nutria                                             34  1.3

>pir||INKS insulin - casiragua
          Length = 50

 Score = 36.2 bits (82), Expect = 0.25
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 528 IFDLQHTSCKRRGFYRS*QSIVSICVTVIAITADLLKYC 412
           + D  ++ CK RGFYR  + IV  C T I     LL YC
Sbjct: 11  LVDTLYSVCKHRGFYRPSEGIVDQCCTNICSRNQLLTYC 49

>pir||INCU insulin - nutria
          Length = 51

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (50%)
 Frame = -3

Query: 528 IFDLQHTSCKRRGFYRS*QSIVSICVTVIAITADLLKYC 412
           + D  ++ C+ RGFYR    IV  C T I     L+ YC
Sbjct: 11  LVDTLYSVCRHRGFYRPNDGIVDQCCTNICSRNQLMSYC 49

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,301,594
Number of Sequences: 1393205
Number of extensions: 8659150
Number of successful extensions: 16708
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16708
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD013e03_f BP045035 1 361
2 MFBL017d11_f BP042109 36 533




Lotus japonicus
Kazusa DNA Research Institute