Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017994A_C01 KMC017994A_c01
(910 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201156.1| putative protein; protein id: At5g63510.1, supp... 392 e-108
gb|AAM64682.1| unknown [Arabidopsis thaliana] 391 e-108
gb|AAK96778.1| Unknown protein [Arabidopsis thaliana] gi|1797879... 390 e-107
ref|NP_190437.1| putative protein; protein id: At3g48680.1, supp... 389 e-107
gb|AAM61583.1| unknown [Arabidopsis thaliana] 140 3e-32
>ref|NP_201156.1| putative protein; protein id: At5g63510.1, supported by cDNA:
31971., supported by cDNA: gi_15451013, supported by
cDNA: gi_17978794 [Arabidopsis thaliana]
gi|25091501|sp|Q9FMV1|UMP7_ARATH Unknown mitochondrial
protein At5g63510 gi|9758292|dbj|BAB08816.1| contains
similarity to acetyltransferase~gene_id:MLE2.14
[Arabidopsis thaliana]
Length = 252
Score = 392 bits (1008), Expect = e-108
Identities = 196/230 (85%), Positives = 210/230 (91%), Gaps = 5/230 (2%)
Frame = +2
Query: 29 AAERAFA--TEAAK---SVAPSADPVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAG 193
AAE A A TE K +V+PS D VKWDYRGQR+IIPLGQWLPK+AVDAYVAPNVVLAG
Sbjct: 23 AAEAALARKTELPKPQFTVSPSTDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAG 82
Query: 194 QVTVWDGASVWPGCVLRGDLNKISIGFCSNVQERCVLHAAWSSPTGLPAETTVERYVTVG 373
QVTVWDG+SVW G VLRGDLNKI++GFCSNVQERCV+HAAWSSPTGLPA T ++RYVTVG
Sbjct: 83 QVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVG 142
Query: 374 AYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPSGELWAGNPARFV 553
AYSLLRSCTIEPECIIGQHSILMEGSLVET+SILEAGSVVPPGRRIPSGELW GNPARF+
Sbjct: 143 AYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFI 202
Query: 554 RTLTHEEILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFKKSLGIAV 703
RTLT+EE LEIPKLAVAIN LS D+F EFLPYSTVYLEVEKFKKSLGIAV
Sbjct: 203 RTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252
>gb|AAM64682.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 391 bits (1004), Expect = e-108
Identities = 195/230 (84%), Positives = 210/230 (90%), Gaps = 5/230 (2%)
Frame = +2
Query: 29 AAERAFA--TEAAK---SVAPSADPVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAG 193
AAE A A TE K +V+PS D VKWDYRGQR+IIPLGQWLPK+AVDAYVAPNVVLAG
Sbjct: 23 AAEAALARKTELPKPQFTVSPSTDLVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAG 82
Query: 194 QVTVWDGASVWPGCVLRGDLNKISIGFCSNVQERCVLHAAWSSPTGLPAETTVERYVTVG 373
QVTVWDG+SVW G VLRGDLNKI++GFCSNVQERCV+HAAWSSPTGLPA T ++RYVTVG
Sbjct: 83 QVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVG 142
Query: 374 AYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPSGELWAGNPARFV 553
AYSLLRSCTIEPECIIGQHSILMEGSLVET+SILEAGSVVPPGRRIPSGELW GNPARF+
Sbjct: 143 AYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFI 202
Query: 554 RTLTHEEILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFKKSLGIAV 703
RTLT+EE LEIPKLA+AIN LS D+F EFLPYSTVYLEVEKFKKSLGIAV
Sbjct: 203 RTLTNEETLEIPKLALAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252
>gb|AAK96778.1| Unknown protein [Arabidopsis thaliana] gi|17978795|gb|AAL47391.1|
unknown protein [Arabidopsis thaliana]
Length = 252
Score = 390 bits (1001), Expect = e-107
Identities = 195/230 (84%), Positives = 209/230 (90%), Gaps = 5/230 (2%)
Frame = +2
Query: 29 AAERAFA--TEAAK---SVAPSADPVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAG 193
AAE A A TE K +V+PS D VKWDYRGQR+IIPLGQWLPK+AVDAYVAPNVVLAG
Sbjct: 23 AAEAALARKTELPKPQFTVSPSTDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAG 82
Query: 194 QVTVWDGASVWPGCVLRGDLNKISIGFCSNVQERCVLHAAWSSPTGLPAETTVERYVTVG 373
QVTVWDG+SVW G VLRGDLNKI++GFCSNVQ RCV+HAAWSSPTGLPA T ++RYVTVG
Sbjct: 83 QVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQGRCVVHAAWSSPTGLPAATIIDRYVTVG 142
Query: 374 AYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPSGELWAGNPARFV 553
AYSLLRSCTIEPECIIGQHSILMEGSLVET+SILEAGSVVPPGRRIPSGELW GNPARF+
Sbjct: 143 AYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFI 202
Query: 554 RTLTHEEILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFKKSLGIAV 703
RTLT+EE LEIPKLAVAIN LS D+F EFLPYSTVYLEVEKFKKSLGIAV
Sbjct: 203 RTLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTVYLEVEKFKKSLGIAV 252
>ref|NP_190437.1| putative protein; protein id: At3g48680.1, supported by cDNA:
gi_13430603, supported by cDNA: gi_15293166 [Arabidopsis
thaliana] gi|25091504|sp|Q9SMN1|UMP8_ARATH Unknown
mitochondrial protein At3g48680 gi|11358444|pir||T46212
hypothetical protein T8P19.190 - Arabidopsis thaliana
gi|6523099|emb|CAB62357.1| putative protein [Arabidopsis
thaliana] gi|13430604|gb|AAK25924.1|AF360214_1 unknown
protein [Arabidopsis thaliana]
gi|15293167|gb|AAK93694.1| unknown protein [Arabidopsis
thaliana]
Length = 256
Score = 389 bits (999), Expect = e-107
Identities = 190/229 (82%), Positives = 206/229 (88%), Gaps = 3/229 (1%)
Frame = +2
Query: 26 AAAERAFATEAAK---SVAPSADPVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQ 196
A A TE K V PS D VKWDYRGQR+IIPLGQWLPK+AVDAYVAPNVVLAGQ
Sbjct: 28 AEAVAVATTETPKPKSQVTPSPDRVKWDYRGQRQIIPLGQWLPKVAVDAYVAPNVVLAGQ 87
Query: 197 VTVWDGASVWPGCVLRGDLNKISIGFCSNVQERCVLHAAWSSPTGLPAETTVERYVTVGA 376
VTVWDG+SVW G VLRGDLNKI++GFCSNVQERCV+HAAWSSPTGLPA+T ++RYVTVGA
Sbjct: 88 VTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGA 147
Query: 377 YSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPGRRIPSGELWAGNPARFVR 556
YSLLRSCTIEPECIIGQHSILMEGSLVET+SILEAGSV+PPGRRIPSGELW GNPARF+R
Sbjct: 148 YSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIR 207
Query: 557 TLTHEEILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFKKSLGIAV 703
TLT+EE LEIPKLAVAIN LS D+F EFLPYST+YLEVEKFKKSLGIA+
Sbjct: 208 TLTNEETLEIPKLAVAINHLSGDYFSEFLPYSTIYLEVEKFKKSLGIAI 256
>gb|AAM61583.1| unknown [Arabidopsis thaliana]
Length = 275
Score = 140 bits (352), Expect = 3e-32
Identities = 74/183 (40%), Positives = 114/183 (61%)
Frame = +2
Query: 143 PKIAVDAYVAPNVVLAGQVTVWDGASVWPGCVLRGDLNKISIGFCSNVQERCVLHAAWSS 322
P + DA+VAP+ + G V + G+S+W GCVLRGD+N +S+G +N+Q+ ++H A S+
Sbjct: 53 PIVDKDAFVAPSASVIGDVHIGRGSSIWYGCVLRGDVNTVSVGSGTNIQDNSLVHVAKSN 112
Query: 323 PTGLPAETTVERYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETQSILEAGSVVPPG 502
+G T + VT+G ++L CT+E E IG + L++G +VE ++ AG++V
Sbjct: 113 LSGKVHPTIIGDNVTIGHSAVLHGCTVEDETFIGMGATLLDGVVVEKHGMVAAGALVRQN 172
Query: 503 RRIPSGELWAGNPARFVRTLTHEEILEIPKLAVAINDLSRDHFDEFLPYSTVYLEVEKFK 682
RIPSGE+W GNPARF+R LT EEI I + A ++L++ H E + L V +F+
Sbjct: 173 TRIPSGEVWGGNPARFLRKLTDEEIAFISQSATNYSNLAQAHAAE----NAKPLNVIEFE 228
Query: 683 KSL 691
K L
Sbjct: 229 KVL 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 841,639,337
Number of Sequences: 1393205
Number of extensions: 20736124
Number of successful extensions: 69769
Number of sequences better than 10.0: 295
Number of HSP's better than 10.0 without gapping: 64076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69333
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49641180728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
