Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017971A_C01 KMC017971A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S59117 small nuclear ribonucleoprotein U1A - potato gi|1050... 203 1e-51
ref|NP_182280.1| small nuclear ribonucleoprotein U1A; protein id... 178 4e-44
gb|AAK70905.1|AC087551_4 putative small nuclear ribonucleoprotei... 158 4e-38
gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Ara... 136 2e-31
ref|NP_180585.1| small nuclear ribonucleoprotein U2B, putative; ... 136 2e-31
>pir||S59117 small nuclear ribonucleoprotein U1A - potato
gi|1050840|emb|CAA90282.1| U1snRNP-specific protein, U1A
[Solanum tuberosum]
Length = 253
Score = 203 bits (517), Expect = 1e-51
Identities = 98/122 (80%), Positives = 108/122 (88%), Gaps = 4/122 (3%)
Frame = -2
Query: 571 DQNDANLAGMGLNPAYPGAYGATP----IPYPGGLKSMVPEAPAPPNNILFIQNLPNETT 404
DQ D+N AGMGLNPAY GAYGA P IPY GG K+ VPEAPAPPN+ILF+QNLP+++T
Sbjct: 132 DQQDSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQST 191
Query: 403 PMMLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYA 224
PMMLQMLF QYPGFKEVRM+E KPGIAF+EYGDEMQSTVAMQALQGFKIT +NPMLITYA
Sbjct: 192 PMMLQMLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYA 251
Query: 223 KK 218
KK
Sbjct: 252 KK 253
>ref|NP_182280.1| small nuclear ribonucleoprotein U1A; protein id: At2g47580.1,
supported by cDNA: gi_15450590, supported by cDNA:
gi_16649010, supported by cDNA: gi_20259985 [Arabidopsis
thaliana] gi|2119046|pir||S59118 small nuclear
ribonucleoprotein U1A [imported] - Arabidopsis thaliana
gi|1050430|emb|CAA90283.1| U1snRNP-specific protein
[Arabidopsis thaliana] gi|2529669|gb|AAC62852.1| small
nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|15450591|gb|AAK96567.1| At2g47580/T30B22.12
[Arabidopsis thaliana] gi|16649011|gb|AAL24357.1| small
nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|20259986|gb|AAM13340.1| small nuclear
ribonucleoprotein U1A [Arabidopsis thaliana]
gi|22655484|gb|AAM98334.1| At2g47580/T30B22.12
[Arabidopsis thaliana]
Length = 250
Score = 178 bits (452), Expect = 4e-44
Identities = 88/120 (73%), Positives = 99/120 (82%), Gaps = 4/120 (3%)
Frame = -2
Query: 565 NDANLAGMGLNPAYPGAYGATP----IPYPGGLKSMVPEAPAPPNNILFIQNLPNETTPM 398
+D+ GM +N AYPG YGA P +PYPGG+K +PEAPAPPNNILF+QNLP+ETTPM
Sbjct: 132 HDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPM 191
Query: 397 MLQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 218
+LQMLF QY GFKEVRM+E KPGIAFVE+ DEMQSTVAMQ LQGFKI QN MLITYAKK
Sbjct: 192 VLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
>gb|AAK70905.1|AC087551_4 putative small nuclear ribonucleoprotein U1A [Oryza sativa]
Length = 253
Score = 158 bits (400), Expect = 4e-38
Identities = 82/119 (68%), Positives = 93/119 (77%), Gaps = 3/119 (2%)
Frame = -2
Query: 565 NDANLAGMGLNPAYPGAYGATPI---PYPGGLKSMVPEAPAPPNNILFIQNLPNETTPMM 395
+D + G+G+N AYPG YGA P+ P+ G K M+PE P NNILF+QNLP+ETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEIIVP-NNILFVQNLPHETTPMM 194
Query: 394 LQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 218
LQMLF QYPGFKEVRMVE KPGIAFVEYGDE Q+T AM LQGFKIT N MLI+YAKK
Sbjct: 195 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 136 bits (343), Expect = 2e-31
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = -2
Query: 523 PGAYGATPIP--YPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVR 350
P A P P P G ++M PPNNILFIQNLP+ETT MMLQ+LF QYPGFKE+R
Sbjct: 135 PSANNGVPAPSFQPSGQETM------PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIR 188
Query: 349 MVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 218
M++ KPGIAFVEY D++Q+++AMQ LQGFKITPQNPM+I++AKK
Sbjct: 189 MIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
Score = 32.3 bits (72), Expect = 4.3
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = -2
Query: 460 APAPPNNILFIQNL----PNETTPMMLQMLFLQYPGFKEVRMVETKP--GIAFVEYGDEM 299
A PPN+ ++IQNL E L LF Q+ +V ++T G A+V + +
Sbjct: 4 ADIPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 298 QSTVAMQALQGFKITPQNPMLITYAK 221
+ A++ +Q F PM + YAK
Sbjct: 64 AAGHAVRQMQNFP-XYDKPMRLQYAK 88
>ref|NP_180585.1| small nuclear ribonucleoprotein U2B, putative; protein id:
At2g30260.1, supported by cDNA: 34995. [Arabidopsis
thaliana] gi|25294326|pir||C84706 probable small nuclear
ribonucleoprotein U2B [imported] - Arabidopsis thaliana
gi|2347192|gb|AAC16931.1| putative small nuclear
ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis
thaliana]
Length = 232
Score = 136 bits (343), Expect = 2e-31
Identities = 67/104 (64%), Positives = 82/104 (78%), Gaps = 2/104 (1%)
Frame = -2
Query: 523 PGAYGATPIP--YPGGLKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVR 350
P A P P P G ++M PPNNILFIQNLP+ETT MMLQ+LF QYPGFKE+R
Sbjct: 135 PSANNGVPAPSFQPSGQETM------PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIR 188
Query: 349 MVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPMLITYAKK 218
M++ KPGIAFVEY D++Q+++AMQ LQGFKITPQNPM+I++AKK
Sbjct: 189 MIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
Score = 32.3 bits (72), Expect = 4.3
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = -2
Query: 460 APAPPNNILFIQNL----PNETTPMMLQMLFLQYPGFKEVRMVETKP--GIAFVEYGDEM 299
A PPN ++IQNL E L LF Q+ +V ++T G A+V + +
Sbjct: 4 ADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 298 QSTVAMQALQGFKITPQNPMLITYAK 221
+ A++ +Q F PM + YAK
Sbjct: 64 AAGHAVRQMQNFPFY-DKPMRLQYAK 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,231,519
Number of Sequences: 1393205
Number of extensions: 11693493
Number of successful extensions: 30391
Number of sequences better than 10.0: 196
Number of HSP's better than 10.0 without gapping: 28600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30323
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
