Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017950A_C01 KMC017950A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P30171|ACTB_SOLTU ACTIN 97 gi|100417|pir||S20098 actin 97 - p... 257 6e-68
sp|P30167|ACT3_SOLTU Actin 58 gi|100421|pir||S20094 actin 58 - p... 257 6e-68
pir||T51177 actin [imported] - Striga asiatica gi|1531672|gb|AAC... 257 6e-68
pir||T51175 actin [imported] - upland cotton gi|3420239|gb|AAC31... 257 6e-68
ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arab... 257 8e-68
>sp|P30171|ACTB_SOLTU ACTIN 97 gi|100417|pir||S20098 actin 97 - potato
gi|21544|emb|CAA39280.1| actin [Solanum tuberosum]
Length = 377
Score = 257 bits (657), Expect = 6e-68
Identities = 125/128 (97%), Positives = 128/128 (99%)
Frame = -2
Query: 580 ITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 401
ITIGAERFRCPEVLFQPS++GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP
Sbjct: 250 ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 309
Query: 400 GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 221
GIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP
Sbjct: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 220 SIVHRKCF 197
SIVHRKCF
Sbjct: 370 SIVHRKCF 377
>sp|P30167|ACT3_SOLTU Actin 58 gi|100421|pir||S20094 actin 58 - potato
gi|21536|emb|CAA39278.1| actin [Solanum tuberosum]
Length = 377
Score = 257 bits (657), Expect = 6e-68
Identities = 125/128 (97%), Positives = 128/128 (99%)
Frame = -2
Query: 580 ITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 401
ITIGAERFRCPEVLFQPSL+GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP
Sbjct: 250 ITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 309
Query: 400 GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 221
GIADRMSKE++ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP
Sbjct: 310 GIADRMSKELTALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 220 SIVHRKCF 197
SIVHRKCF
Sbjct: 370 SIVHRKCF 377
>pir||T51177 actin [imported] - Striga asiatica gi|1531672|gb|AAC49651.1| actin
[Striga asiatica]
Length = 377
Score = 257 bits (657), Expect = 6e-68
Identities = 125/128 (97%), Positives = 128/128 (99%)
Frame = -2
Query: 580 ITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 401
ITIGAERFRCPEVLFQPS++GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP
Sbjct: 250 ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 309
Query: 400 GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 221
GIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP
Sbjct: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 220 SIVHRKCF 197
SIVHRKCF
Sbjct: 370 SIVHRKCF 377
>pir||T51175 actin [imported] - upland cotton gi|3420239|gb|AAC31886.1| actin
[Gossypium hirsutum]
Length = 377
Score = 257 bits (657), Expect = 6e-68
Identities = 125/128 (97%), Positives = 128/128 (99%)
Frame = -2
Query: 580 ITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 401
ITIGAERFRCPEVLFQPS++GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP
Sbjct: 250 ITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 309
Query: 400 GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 221
GIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP
Sbjct: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 220 SIVHRKCF 197
SIVHRKCF
Sbjct: 370 SIVHRKCF 377
>ref|NP_187818.1| actin 11 (ACT11); protein id: At3g12110.1 [Arabidopsis thaliana]
gi|1703129|sp|P53496|ACTB_ARATH Actin 11
gi|2129522|pir||S68109 actin 11 - Arabidopsis thaliana
gi|1002533|gb|AAB39404.1| actin-11
gi|9294108|dbj|BAB01959.1| actin 11 [Arabidopsis
thaliana] gi|12322007|gb|AAG51045.1|AC069473_7 actin 11
(ACT11); 24016-22523 [Arabidopsis thaliana]
gi|21593328|gb|AAM65277.1| actin 11 (ACT11) [Arabidopsis
thaliana] gi|26451746|dbj|BAC42968.1| unknown protein
[Arabidopsis thaliana] gi|28973377|gb|AAO64013.1|
putative actin 11 (ACT11) [Arabidopsis thaliana]
Length = 377
Score = 257 bits (656), Expect = 8e-68
Identities = 126/128 (98%), Positives = 127/128 (98%)
Frame = -2
Query: 580 ITIGAERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 401
ITIG ERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP
Sbjct: 250 ITIGGERFRCPEVLFQPSLVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFP 309
Query: 400 GIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 221
GIADRMSKEI+ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP
Sbjct: 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369
Query: 220 SIVHRKCF 197
SIVHRKCF
Sbjct: 370 SIVHRKCF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,914,293
Number of Sequences: 1393205
Number of extensions: 12187576
Number of successful extensions: 34872
Number of sequences better than 10.0: 1375
Number of HSP's better than 10.0 without gapping: 33039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34574
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
