Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017949A_C01 KMC017949A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO00680.1| Unknown protein [Oryza sativa (japonica cultivar-... 55 8e-08
pir||B84649 hypothetical protein At2g25500 [imported] - Arabidop... 57 1e-07
dbj|BAB10931.1| gb|AAD20709.1~gene_id:K1F13.22~similar to unknow... 53 2e-06
ref|NP_201456.2| putative protein; protein id: At5g66550.1, supp... 53 2e-06
ref|NP_199091.1| unknown protein; protein id: At5g42770.1 [Arabi... 52 3e-06
>gb|AAO00680.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
gi|27356667|gb|AAO06956.1| Unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 359
Score = 55.1 bits (131), Expect(2) = 8e-08
Identities = 25/40 (62%), Positives = 34/40 (84%)
Frame = -3
Query: 308 GVLMLEHPLTLPFVDAVVGSADTVMGLSKALTEKLLLEAL 189
G L++EHPLT P V+A+VG+ D+VMGL K+LTEKL+ E+L
Sbjct: 317 GGLLVEHPLTSPLVEAIVGTIDSVMGLPKSLTEKLIKESL 356
Score = 22.3 bits (46), Expect(2) = 8e-08
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 345 SQIEEGVTFNVAGGFDAGTPL 283
S IEEG F VAGG PL
Sbjct: 305 SLIEEGDVFYVAGGLLVEHPL 325
>pir||B84649 hypothetical protein At2g25500 [imported] - Arabidopsis thaliana
Length = 163
Score = 57.0 bits (136), Expect = 1e-07
Identities = 27/40 (67%), Positives = 31/40 (77%)
Frame = -3
Query: 308 GVLMLEHPLTLPFVDAVVGSADTVMGLSKALTEKLLLEAL 189
G LMLEHPL PF+D+VVG DTVMGLSK LTEK + + L
Sbjct: 124 GGLMLEHPLISPFIDSVVGGVDTVMGLSKELTEKFINDVL 163
>dbj|BAB10931.1| gb|AAD20709.1~gene_id:K1F13.22~similar to unknown protein
[Arabidopsis thaliana]
Length = 153
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = -3
Query: 308 GVLMLEHPLTLPFVDAVVGSADTVMGLSKALTEKLLLEAL 189
G L LEHPL PF+D+VVG DTVMGL K LTEK + + L
Sbjct: 113 GGLTLEHPLISPFIDSVVGGVDTVMGLPKELTEKFINDVL 152
>ref|NP_201456.2| putative protein; protein id: At5g66550.1, supported by cDNA:
gi_15450452 [Arabidopsis thaliana]
Length = 207
Score = 52.8 bits (125), Expect = 2e-06
Identities = 25/40 (62%), Positives = 29/40 (72%)
Frame = -3
Query: 308 GVLMLEHPLTLPFVDAVVGSADTVMGLSKALTEKLLLEAL 189
G L LEHPL PF+D+VVG DTVMGL K LTEK + + L
Sbjct: 167 GGLTLEHPLISPFIDSVVGGVDTVMGLPKELTEKFINDVL 206
>ref|NP_199091.1| unknown protein; protein id: At5g42770.1 [Arabidopsis thaliana]
gi|10177280|dbj|BAB10633.1| gene_id:MJB21.15~unknown
protein [Arabidopsis thaliana]
Length = 208
Score = 52.4 bits (124), Expect = 3e-06
Identities = 25/40 (62%), Positives = 30/40 (74%)
Frame = -3
Query: 308 GVLMLEHPLTLPFVDAVVGSADTVMGLSKALTEKLLLEAL 189
G L++EHPL LP V VVG+ D+VMGL K LTEKL+ E L
Sbjct: 166 GALLIEHPLILPCVKEVVGTTDSVMGLPKELTEKLIKEVL 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,609,593
Number of Sequences: 1393205
Number of extensions: 7994456
Number of successful extensions: 21021
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21014
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
