Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017879A_C01 KMC017879A_c01
(772 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF14843.1|AC011664_25 hypothetical protein [Arabidopsis thal... 69 7e-11
ref|NP_566156.2| hypothetical protein; protein id: At3g01920.1, ... 69 7e-11
ref|NP_276803.1| conserved protein [Methanothermobacter thermaut... 41 0.022
ref|ZP_00031871.1| hypothetical protein [Burkholderia fungorum] 40 0.048
ref|NP_813039.1| conserved hypothetical protein [Bacteroides the... 40 0.048
>gb|AAF14843.1|AC011664_25 hypothetical protein [Arabidopsis thaliana]
Length = 297
Score = 68.9 bits (167), Expect = 7e-11
Identities = 32/48 (66%), Positives = 38/48 (78%)
Frame = -1
Query: 691 ALNSILVVQGLDFVVDGGVRVAEPSTVVDMRKMPPKVLRQGKGPILHW 548
A+ I +GLDFVVDGG+RVAEPST+VDM PKV+R+GKGPIL W
Sbjct: 231 AIGDIYGPEGLDFVVDGGIRVAEPSTIVDMTGPYPKVIREGKGPILPW 278
>ref|NP_566156.2| hypothetical protein; protein id: At3g01920.1, supported by cDNA:
gi_19310490 [Arabidopsis thaliana]
gi|6091731|gb|AAF03443.1|AC010797_19 hypothetical
protein [Arabidopsis thaliana]
gi|19310491|gb|AAL84979.1| At3g1920/F28J7.25
[Arabidopsis thaliana] gi|23505865|gb|AAN28792.1|
At3g1920/F28J7.25 [Arabidopsis thaliana]
Length = 307
Score = 68.9 bits (167), Expect = 7e-11
Identities = 32/48 (66%), Positives = 38/48 (78%)
Frame = -1
Query: 691 ALNSILVVQGLDFVVDGGVRVAEPSTVVDMRKMPPKVLRQGKGPILHW 548
A+ I +GLDFVVDGG+RVAEPST+VDM PKV+R+GKGPIL W
Sbjct: 241 AIGDIYGPEGLDFVVDGGIRVAEPSTIVDMTGPYPKVIREGKGPILPW 288
>ref|NP_276803.1| conserved protein [Methanothermobacter thermautotrophicus]
gi|7429865|pir||C69093 conserved hypothetical protein
MTH1692 - Methanobacterium thermoautotrophicum (strain
Delta H) gi|22218836|pdb|1JCU|A Chain A, Solution
Structure Of Mth1692 Protein From Methanobacterium
Thermoautotrophicum gi|2622823|gb|AAB86164.1| conserved
protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 208
Score = 40.8 bits (94), Expect = 0.022
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -1
Query: 670 VQGLDFVVDGGVRV-AEPSTVVDMRKMPPKVLRQGKGPI 557
+ +D V+D G + EPSTV+D+ PP+VLR+GKGP+
Sbjct: 159 LDAVDLVLDAGDCLDMEPSTVIDLTVNPPRVLRRGKGPL 197
>ref|ZP_00031871.1| hypothetical protein [Burkholderia fungorum]
Length = 256
Score = 39.7 bits (91), Expect = 0.048
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -1
Query: 661 LDFVVDGGVRVAEPSTVVDMRKMPPKVLRQGKGPI 557
LD V+DGG V EPSTV+D+ P ++R G+G +
Sbjct: 213 LDLVIDGGPCVCEPSTVIDLTGAEPVLVRAGRGSL 247
>ref|NP_813039.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482] gi|29341445|gb|AAO79233.1| conserved
hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 204
Score = 39.7 bits (91), Expect = 0.048
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -1
Query: 661 LDFVVDGGVRVAEPSTVVDMRKMPPKVLRQGKG 563
+D V+DGG+ EPSTVV + P+++RQGKG
Sbjct: 167 VDLVIDGGIGGIEPSTVVKCTEDEPEIVRQGKG 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 623,300,399
Number of Sequences: 1393205
Number of extensions: 13294771
Number of successful extensions: 29612
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 27979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29580
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
