Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017873A_C01 KMC017873A_c01
(750 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565889.1| expressed protein; protein id: At2g38450.1, sup... 146 4e-34
gb|AAO42324.1| unknown protein [Arabidopsis thaliana] 145 5e-34
gb|AAM62527.1| unknown [Arabidopsis thaliana] 144 2e-33
ref|NP_196155.1| putative protein; protein id: At5g05360.1 [Arab... 117 2e-25
pir||T02500 hypothetical protein At2g38450 [imported] - Arabidop... 92 8e-18
>ref|NP_565889.1| expressed protein; protein id: At2g38450.1, supported by cDNA:
14329. [Arabidopsis thaliana] gi|20197245|gb|AAC28759.2|
expressed protein [Arabidopsis thaliana]
Length = 105
Score = 146 bits (368), Expect = 4e-34
Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 3/97 (3%)
Frame = +1
Query: 190 ESSSGRPTSNGR---VPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPK 360
+SSS TS VPLS VV+DC KRWFKDTL+EAK G+I MQVL+GQMY +GYGVPK
Sbjct: 7 DSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPK 66
Query: 361 DAQKGRIWLTKASRVRSSVWKVGDKRPGYNASDSDSD 471
DA+KGR+W+TKASRVRSSVWKV DKRPGYNASDSDS+
Sbjct: 67 DARKGRLWITKASRVRSSVWKVIDKRPGYNASDSDSE 103
>gb|AAO42324.1| unknown protein [Arabidopsis thaliana]
Length = 157
Score = 145 bits (367), Expect = 5e-34
Identities = 68/107 (63%), Positives = 81/107 (75%), Gaps = 4/107 (3%)
Frame = +1
Query: 175 KKGYMESSSGRPTSNG----RVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCT 342
K G S+ P S RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMYC+
Sbjct: 51 KAGSHSGSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCS 110
Query: 343 GYGVPKDAQKGRIWLTKASRVRSSVWKVGDKRPGYNASDSDSDDLEE 483
GYG+PKD KGR W+ KASR RSS W+V DK PGYNASDSDS+D ++
Sbjct: 111 GYGIPKDENKGRAWINKASRTRSSAWQVSDKPPGYNASDSDSNDKKD 157
>gb|AAM62527.1| unknown [Arabidopsis thaliana]
Length = 105
Score = 144 bits (362), Expect = 2e-33
Identities = 71/97 (73%), Positives = 81/97 (83%), Gaps = 3/97 (3%)
Frame = +1
Query: 190 ESSSGRPTSNGR---VPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPK 360
+SSS TS VPLS VV+DC K WFKDTL+EAK G+I MQVL+GQMY +GYGVPK
Sbjct: 7 DSSSTTTTSETARRFVPLSSVVSDCAKXWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPK 66
Query: 361 DAQKGRIWLTKASRVRSSVWKVGDKRPGYNASDSDSD 471
DA+KGR+W+TKASRVRSSVWKV DKRPGYNASDSDS+
Sbjct: 67 DAKKGRLWITKASRVRSSVWKVIDKRPGYNASDSDSE 103
>ref|NP_196155.1| putative protein; protein id: At5g05360.1 [Arabidopsis thaliana]
gi|10176748|dbj|BAB09979.1|
gene_id:K18I23.16~pir||T02500~similar to unknown protein
[Arabidopsis thaliana]
Length = 179
Score = 117 bits (292), Expect = 2e-25
Identities = 54/87 (62%), Positives = 64/87 (73%), Gaps = 4/87 (4%)
Frame = +1
Query: 175 KKGYMESSSGRPTSNG----RVPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCT 342
K G S+ P S RVPL++VV DCV+RWF+DTLKEAK GD+ MQVLVGQMYC+
Sbjct: 57 KAGSHSGSNPAPASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCS 116
Query: 343 GYGVPKDAQKGRIWLTKASRVRSSVWK 423
GYG+PKD KGR W+ KASR RSS W+
Sbjct: 117 GYGIPKDENKGRAWINKASRTRSSAWQ 143
>pir||T02500 hypothetical protein At2g38450 [imported] - Arabidopsis thaliana
Length = 131
Score = 92.0 bits (227), Expect = 8e-18
Identities = 53/97 (54%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Frame = +1
Query: 190 ESSSGRPTSNGR---VPLSEVVADCVKRWFKDTLKEAKGGDINMQVLVGQMYCTGYGVPK 360
+SSS TS VPLS VV+DC KRWFKDTL+EAK G+I MQVL+GQMY +GYGVPK
Sbjct: 40 DSSSTTTTSETTRRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPK 99
Query: 361 DAQKGRIWLTKASRVRSSVWKVGDKRPGYNASDSDSD 471
DA+K + V GYNASDSDS+
Sbjct: 100 DARKVSSLFPPFQSLLFQVL-------GYNASDSDSE 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 683,962,872
Number of Sequences: 1393205
Number of extensions: 16129764
Number of successful extensions: 41959
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 40243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41928
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
