Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017837A_C01 KMC017837A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172370.1| hypothetical protein; protein id: At1g08960.1 [... 138 4e-32
ref|NP_197288.1| potassium-dependent sodium-calcium exchanger - ... 50 2e-05
gb|AAL58918.1|AF462830_1 AT5g17860/MVA3_210 [Arabidopsis thaliana] 50 2e-05
ref|NP_564650.1| unknown protein; protein id: At1g54115.1 [Arabi... 45 3e-04
ref|NP_593332.1| CaCA sodium/calcium exchanger [Schizosaccharomy... 45 4e-04
>ref|NP_172370.1| hypothetical protein; protein id: At1g08960.1 [Arabidopsis
thaliana] gi|25402504|pir||D86221 hypothetical protein
[imported] - Arabidopsis thaliana
gi|1922938|gb|AAB70411.1| Similar to Caenorhabditis
hypothetical protein CO7A9.11 (gb|Z29094). [Arabidopsis
thaliana]
Length = 546
Score = 138 bits (347), Expect = 4e-32
Identities = 67/84 (79%), Positives = 74/84 (87%)
Frame = -2
Query: 496 PMFNMLVGLGTALVIQTVNIYPRAYELSFPVGIVMAFVFLLLSLMGSLLVIPWCRFRVPR 317
PMFNMLVGLG+ALV+QT N+YP AY+L F VGIV+AFVFLLLSLMGSLLVI W RFRVPR
Sbjct: 462 PMFNMLVGLGSALVMQTANVYPDAYKLGFHVGIVIAFVFLLLSLMGSLLVITWSRFRVPR 521
Query: 316 FWGFCLVGLYIAFTAVSLIVAMFS 245
FWG CLVGLY+AFT VSLI+A S
Sbjct: 522 FWGICLVGLYVAFTFVSLIIASVS 545
>ref|NP_197288.1| potassium-dependent sodium-calcium exchanger - like protein;
protein id: At5g17860.1, supported by cDNA: gi_18087574
[Arabidopsis thaliana] gi|10177887|dbj|BAB11219.1|
contains similarity to unknown
protein~gb|AAD25785.1~gene_id:MPI7.2 [Arabidopsis
thaliana] gi|22655386|gb|AAM98285.1| At5g17860/MVA3_210
[Arabidopsis thaliana]
Length = 570
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/78 (29%), Positives = 46/78 (58%)
Frame = -2
Query: 496 PMFNMLVGLGTALVIQTVNIYPRAYELSFPVGIVMAFVFLLLSLMGSLLVIPWCRFRVPR 317
P+FN ++GLG LVI ++ YP Y + ++ FL++ L+ +L+++P + R+ +
Sbjct: 482 PLFNTVIGLGVPLVISSLAEYPGVYIIPSDNSLLETLGFLMVGLLWALVIMPKKKMRLDK 541
Query: 316 FWGFCLVGLYIAFTAVSL 263
G L+ +Y+ F ++ L
Sbjct: 542 LVGGGLLAIYLCFLSLRL 559
>gb|AAL58918.1|AF462830_1 AT5g17860/MVA3_210 [Arabidopsis thaliana]
Length = 570
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/78 (29%), Positives = 46/78 (58%)
Frame = -2
Query: 496 PMFNMLVGLGTALVIQTVNIYPRAYELSFPVGIVMAFVFLLLSLMGSLLVIPWCRFRVPR 317
P+FN ++GLG LVI ++ YP Y + ++ FL++ L+ +L+++P + R+ +
Sbjct: 482 PLFNTVIGLGVPLVISSLAEYPGVYIIPSDNSLLETLGFLMVGLLWALVIMPKKKMRLDK 541
Query: 316 FWGFCLVGLYIAFTAVSL 263
G L+ +Y+ F ++ L
Sbjct: 542 LVGGGLLAIYLCFLSLRL 559
>ref|NP_564650.1| unknown protein; protein id: At1g54115.1 [Arabidopsis thaliana]
gi|25405695|pir||B96582 hypothetical protein F15I1.21
[imported] - Arabidopsis thaliana
gi|4587554|gb|AAD25785.1|AC006577_21 Similar to
gb|AJ005701 Na/Ca,K-exchanger from Caenorhabditis
elegans. ESTs gb|T04173 and gb|AA585918 come from this
gene. [Arabidopsis thaliana]
Length = 644
Score = 45.4 bits (106), Expect = 3e-04
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = -2
Query: 496 PMFNMLVGLGTALVIQTVNIYPRAYELSFPVGIVMAFVFLLLSLMGSLLVIPWCRFRVPR 317
PMFN LVGLG ++ + + P Y + + FL+ L+ SL+++P R +
Sbjct: 556 PMFNTLVGLGMSMFLGAWSKSPETYMIPEDNSLFYTLGFLIFGLIWSLVMLPRNEMRPNK 615
Query: 316 FWGFCLVGLYIAFTAVSLIVAM 251
G L+ LY+ F L AM
Sbjct: 616 VMGIGLITLYLIFVTFRLSSAM 637
>ref|NP_593332.1| CaCA sodium/calcium exchanger [Schizosaccharomyces pombe]
gi|7492707|pir||T38674 probable membrane transport
protein - fission yeast (Schizosaccharomyces pombe)
gi|2104422|emb|CAB08751.1| CaCA sodium/calcium exchanger
[Schizosaccharomyces pombe]
Length = 743
Score = 45.1 bits (105), Expect = 4e-04
Identities = 24/82 (29%), Positives = 43/82 (52%)
Frame = -2
Query: 496 PMFNMLVGLGTALVIQTVNIYPRAYELSFPVGIVMAFVFLLLSLMGSLLVIPWCRFRVPR 317
P N+L+G+G + +++ + + P + + FLL L+ L+ +P RFRV R
Sbjct: 658 PTLNILIGIGISSFYSSISNHGNDSVIEIPHSLSITAYFLLACLLLLLIYVPLNRFRVNR 717
Query: 316 FWGFCLVGLYIAFTAVSLIVAM 251
G L LYI T+ +++V +
Sbjct: 718 VLGLLLFILYIVGTSTNIVVEL 739
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,445,589
Number of Sequences: 1393205
Number of extensions: 9091086
Number of successful extensions: 22292
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 21636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22263
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
