Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017775A_C01 KMC017775A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_811093.1| conserved hypothetical protein [Bacteroides the... 32 4.8
ref|NP_444271.1| hypothetical protein MGC20460 [Homo sapiens] gi... 32 4.8
pir||T01053 hypothetical protein YUP8H12R.36 - Arabidopsis thali... 27 5.4
pir||S51037 zinc-finger protein - African clawed frog 32 6.3
sp|P18714|ZG20_XENLA GASTRULA ZINC FINGER PROTEIN XFG20-1 (XLCGF... 32 6.3
>ref|NP_811093.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482] gi|29339491|gb|AAO77287.1| conserved
hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 231
Score = 32.0 bits (71), Expect = 4.8
Identities = 15/49 (30%), Positives = 26/49 (52%)
Frame = -3
Query: 411 FSSDMRLKSNEAYMLEQMKSHDGFMQNFGTLDDIMGAMVKREQNELTLM 265
F +D L SNE + E K + ++ +GT +I A+ + E N L ++
Sbjct: 10 FDADDTLWSNEPFFQEVEKQYTDLLKPYGTSKEISAALFQTEMNNLQIL 58
>ref|NP_444271.1| hypothetical protein MGC20460 [Homo sapiens]
gi|11359956|pir||T46375 hypothetical protein
DKFZp434D1319.1 - human gi|6808252|emb|CAB70894.1|
hypothetical protein [Homo sapiens]
Length = 439
Score = 32.0 bits (71), Expect = 4.8
Identities = 25/87 (28%), Positives = 34/87 (38%), Gaps = 9/87 (10%)
Frame = +3
Query: 234 QGKHQIPFLHPSKSTHFVPF*PLHP*CHPRSQNFA*THHGTS---------SAPTCRPHL 386
Q HQ P H H P P HP HP HH S S P RPH+
Sbjct: 50 QPPHQPP--HQPPPQHQPP--PQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHV 105
Query: 387 TSIACPKRNSQLQCTEQLMWKHHLDGQ 467
+ +S++QC ++ +H+ Q
Sbjct: 106 QTAQPQASSSRMQCPQRQGLRHNTTSQ 132
>pir||T01053 hypothetical protein YUP8H12R.36 - Arabidopsis thaliana
gi|3152596|gb|AAC17077.1| YUP8H12R.36 [Arabidopsis
thaliana]
Length = 483
Score = 26.6 bits (57), Expect(2) = 5.4
Identities = 10/28 (35%), Positives = 18/28 (63%)
Frame = -3
Query: 336 QNFGTLDDIMGAMVKREQNELTLMDGEM 253
+N G I+ A++KRE+ + +MD E+
Sbjct: 282 RNLGQAQSILEALIKREEKKRDVMDSEV 309
Score = 23.9 bits (50), Expect(2) = 5.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 503 KIKQCAAIVHLWLAI*MVLPHQLL 432
K++QC +V LW + +L + LL
Sbjct: 256 KLRQCLLLVSLWTTLFFLLVNDLL 279
>pir||S51037 zinc-finger protein - African clawed frog
Length = 675
Score = 31.6 bits (70), Expect = 6.3
Identities = 23/86 (26%), Positives = 34/86 (38%), Gaps = 2/86 (2%)
Frame = +3
Query: 228 IQQGKHQIPFLHPSKSTHFVPF*PLHP*CHPRSQNFA*THHGTSSA--PTCRPHLTSIAC 401
+ G+ P KS LH H + F+ T G + P HLT+
Sbjct: 528 VHTGEKPYPCQQCGKSFSHKSVLKLHLRTHTGDKPFSCTECGKTFTRKPNYESHLTTHTG 587
Query: 402 PKRNSQLQCTEQLMWKHHLDGQPKMH 479
K S +C ++ WK +L+ KMH
Sbjct: 588 KKPFSCTECGKEFAWKRNLEAHYKMH 613
>sp|P18714|ZG20_XENLA GASTRULA ZINC FINGER PROTEIN XFG20-1 (XLCGF20.1)
gi|576444|emb|CAA57965.1| XFG20-1 [Xenopus laevis]
Length = 675
Score = 31.6 bits (70), Expect = 6.3
Identities = 23/86 (26%), Positives = 34/86 (38%), Gaps = 2/86 (2%)
Frame = +3
Query: 228 IQQGKHQIPFLHPSKSTHFVPF*PLHP*CHPRSQNFA*THHGTSSA--PTCRPHLTSIAC 401
+ G+ P KS LH H + F+ T G + P HLT+
Sbjct: 528 VHTGEKPYPCQQCGKSFSHKSVLKLHLRTHTGDKPFSCTECGKTFTRKPNYESHLTTHTG 587
Query: 402 PKRNSQLQCTEQLMWKHHLDGQPKMH 479
K S +C ++ WK +L+ KMH
Sbjct: 588 KKPFSCTECGKEFAWKRNLEAHYKMH 613
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,927,975
Number of Sequences: 1393205
Number of extensions: 9226068
Number of successful extensions: 24279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24255
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
