Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017691A_C01 KMC017691A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92196.1| unnamed protein product [Oryza sativa (japonica ... 40 0.017
emb|CAC39398.1| storekeeper protein [Solanum tuberosum] 38 0.064
gb|AAA59163.1| mucin 37 0.11
ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC... 37 0.11
ref|NP_187144.1| unknown protein; protein id: At3g04930.1, suppo... 37 0.11
>dbj|BAA92196.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 311
Score = 40.0 bits (92), Expect = 0.017
Identities = 18/55 (32%), Positives = 30/55 (53%)
Frame = -2
Query: 443 GVKLNEDVVKKGLELIGASKRAELAGRWKKIEVAELELFAKRAQLIEEQTRLILE 279
G LN D+ G + G + A RW++ ++ ELE++ KR +L+ EQ L+
Sbjct: 251 GAGLNADIAGLGFGIAGLNPGVPGADRWRQHQILELEVYLKRIELVREQVTAALD 305
>emb|CAC39398.1| storekeeper protein [Solanum tuberosum]
Length = 399
Score = 38.1 bits (87), Expect = 0.064
Identities = 18/53 (33%), Positives = 29/53 (53%)
Frame = -2
Query: 422 VVKKGLELIGASKRAELAGRWKKIEVAELELFAKRAQLIEEQTRLILEANKSS 264
++K+ + LI K L +WKK+E E L KR I E RL+++A + +
Sbjct: 347 LLKENMSLIATDKAKVLEEKWKKLEDDEAALMVKRLDFIAEHYRLVVDAMRGN 399
>gb|AAA59163.1| mucin
Length = 1270
Score = 37.4 bits (85), Expect = 0.11
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +2
Query: 242 TTHNPNCLMICSPPKST*SAPQSVEHA*QTAPAPQPLSSSTFPPTQPS*MLQSTPIPSS 418
TT P+ SPP +T + P T P+P + +T PPT S L +TP+P S
Sbjct: 1086 TTTTPSSTTTPSPPPTTMTTPSPT-----TTPSPPTTTMTTLPPTTTSSPLTTTPLPPS 1139
Score = 31.6 bits (70), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 236 CYTTHNPNCLMICSPPKST*SAPQSVEHA*QTAPAPQPLSSSTFPPT---QPS*MLQSTP 406
C TT +P PP +T + P + T P+P +++T PPT P +TP
Sbjct: 770 CITTPSPPTTTPSPPPTTTTTLPPT------TTPSPPTTTTTTPPPTTTPSPPITTTTTP 823
Query: 407 IPS---SPHLHSVSHP 445
+P+ SP + + + P
Sbjct: 824 LPTTTPSPPISTTTTP 839
>ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC2_HUMAN Mucin 2
precursor (Intestinal mucin 2) gi|454154|gb|AAB95295.1|
mucin [Homo sapiens]
Length = 5179
Score = 37.4 bits (85), Expect = 0.11
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +2
Query: 242 TTHNPNCLMICSPPKST*SAPQSVEHA*QTAPAPQPLSSSTFPPTQPS*MLQSTPIPSS 418
TT P+ SPP +T + P T P+P + +T PPT S L +TP+P S
Sbjct: 1711 TTTTPSSTTTPSPPPTTMTTPSPT-----TTPSPPTTTMTTLPPTTTSSPLTTTPLPPS 1764
Score = 31.6 bits (70), Expect = 6.0
Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 6/76 (7%)
Frame = +2
Query: 236 CYTTHNPNCLMICSPPKST*SAPQSVEHA*QTAPAPQPLSSSTFPPT---QPS*MLQSTP 406
C TT +P PP +T + P + T P+P +++T PPT P +TP
Sbjct: 1395 CITTPSPPTTTPSPPPTTTTTLPPT------TTPSPPTTTTTTPPPTTTPSPPITTTTTP 1448
Query: 407 IPS---SPHLHSVSHP 445
+P+ SP + + + P
Sbjct: 1449 LPTTTPSPPISTTTTP 1464
>ref|NP_187144.1| unknown protein; protein id: At3g04930.1, supported by cDNA:
gi_17978963 [Arabidopsis thaliana]
gi|12322848|gb|AAG51410.1|AC009465_10 unknown protein;
41916-40546 [Arabidopsis thaliana]
Length = 456
Score = 37.4 bits (85), Expect = 0.11
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = -2
Query: 410 GLELIGASKRAELAGRWKKIEVAELELFAKRAQLIEEQTRLILEANKS 267
G + G +A RW+K ++ ELE++++R +L++EQ R L K+
Sbjct: 404 GFGVEGGGNKAVADERWRKQQILELEVYSRRLELVQEQIRTTLNELKT 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,069,541
Number of Sequences: 1393205
Number of extensions: 8790411
Number of successful extensions: 29784
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 26406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29214
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
