Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC017690A_C01 KMC017690A_c01
(1201 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567805.1| Expressed protein; protein id: At4g28360.1, sup... 291 2e-77
ref|NP_564605.2| chloroplast 50S ribosomal protein L22, putative... 283 5e-75
pir||T04605 hypothetical protein F20O9.30 - Arabidopsis thaliana 263 5e-69
pir||H96563 hypothetical protein F19K6.5 [imported] - Arabidopsi... 257 2e-67
dbj|BAB39116.1| P0686E09.8 [Oryza sativa (japonica cultivar-group)] 233 3e-60
>ref|NP_567805.1| Expressed protein; protein id: At4g28360.1, supported by cDNA: 18360.
[Arabidopsis thaliana] gi|21553938|gb|AAM63019.1| unknown
[Arabidopsis thaliana]
Length = 271
Score = 291 bits (744), Expect = 2e-77
Identities = 159/275 (57%), Positives = 202/275 (72%), Gaps = 3/275 (1%)
Frame = +3
Query: 228 MVQWQRHIFPILRHIHKGVDHVYHSAPKLSIS--HLSSSFPQGQFQGAWTTTSPSIS-RP 398
MV W+R++ ++R + + V + + S S S +L S F QG Q + PS S RP
Sbjct: 1 MVGWKRNLQTVIRQVGRRVKNSHISTANYSSSTRNLESPFSQGYLQ---SLLRPSYSSRP 57
Query: 399 MYHCFQHQGISSSTWLLANSPEETPVSSPLAPLSLLGSSKGEDQNQKAVSKPENVQAVLK 578
+YH Q GIS+S L A+ E PVSSPL+ +LLGS G+++ QK + K + VQAVLK
Sbjct: 58 LYHHLQQLGISTSRQLQAS---EEPVSSPLSSPALLGS--GKEEEQKIIPKRQKVQAVLK 112
Query: 579 GIKQSPKKVNLVAALVRGMLVKDALLQLQLTVKRAAKTVYQVIHSARANASHNHGLDSDR 758
IKQSPKKVNLVAALVRGM V+DAL+QLQ+TVKRAA+TVY+VIH+ARANA+HNHGLD DR
Sbjct: 113 SIKQSPKKVNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPDR 172
Query: 759 LIIAEAYVGKGFYKKRISIHGKCRHGIMHRPECRLTVVVREITPEEEAKIARLKVHNFKK 938
L++AEA+VGKG + K+++ H K R GI+ P CRLTV+VRE TPEEEA+IARLKVHNFKK
Sbjct: 173 LLVAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFKK 232
Query: 939 LSKRERRLVPHKLIETTPVWGRKNKPTSQNSGAAV 1043
SKRER+LVPHKLIET+P+W R+ + S V
Sbjct: 233 KSKRERQLVPHKLIETSPIWNRRGTKANHRSSELV 267
>ref|NP_564605.2| chloroplast 50S ribosomal protein L22, putative; protein id:
At1g52370.1 [Arabidopsis thaliana]
Length = 269
Score = 283 bits (723), Expect = 5e-75
Identities = 154/273 (56%), Positives = 198/273 (72%), Gaps = 1/273 (0%)
Frame = +3
Query: 228 MVQWQRHIFPILRHIHKGV-DHVYHSAPKLSISHLSSSFPQGQFQGAWTTTSPSISRPMY 404
M WQ+++ ++R + K V D +A S +L S F QG Q +T S RP+Y
Sbjct: 1 MAGWQKNLQIVIRQVGKRVKDSHISTANYSSTRNLESPFSQGYLQSLLRSTYSS--RPLY 58
Query: 405 HCFQHQGISSSTWLLANSPEETPVSSPLAPLSLLGSSKGEDQNQKAVSKPENVQAVLKGI 584
+ Q GIS+S L A E PVSSPL+ +LLGS G+++ QK + K + VQAVLK I
Sbjct: 59 YHLQQLGISTSRQLQAG---EEPVSSPLSSPALLGS--GKEEEQKIIPKRQKVQAVLKSI 113
Query: 585 KQSPKKVNLVAALVRGMLVKDALLQLQLTVKRAAKTVYQVIHSARANASHNHGLDSDRLI 764
KQSPKKVNLVAALVRGM V+DAL+QLQ+TVKRA++TVY+VIH+ARANA+HNHGLD DRL+
Sbjct: 114 KQSPKKVNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLL 173
Query: 765 IAEAYVGKGFYKKRISIHGKCRHGIMHRPECRLTVVVREITPEEEAKIARLKVHNFKKLS 944
+AEA+VGKG + K+++ H K R GI+ P CRLTV+VRE T EEEA+IARLKVHNFKKL+
Sbjct: 174 VAEAFVGKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLN 233
Query: 945 KRERRLVPHKLIETTPVWGRKNKPTSQNSGAAV 1043
KR+R+LVPHKLIET+P+W R+ + S V
Sbjct: 234 KRQRQLVPHKLIETSPIWNRRGTKGNHRSSELV 266
>pir||T04605 hypothetical protein F20O9.30 - Arabidopsis thaliana
Length = 508
Score = 263 bits (671), Expect = 5e-69
Identities = 136/207 (65%), Positives = 167/207 (79%)
Frame = +3
Query: 423 GISSSTWLLANSPEETPVSSPLAPLSLLGSSKGEDQNQKAVSKPENVQAVLKGIKQSPKK 602
GIS+S L A+ E PVSSPL+ +LLGS G+++ QK + K + VQAVLK IKQSPKK
Sbjct: 217 GISTSRQLQAS---EEPVSSPLSSPALLGS--GKEEEQKIIPKRQKVQAVLKSIKQSPKK 271
Query: 603 VNLVAALVRGMLVKDALLQLQLTVKRAAKTVYQVIHSARANASHNHGLDSDRLIIAEAYV 782
VNLVAALVRGM V+DAL+QLQ+TVKRAA+TVY+VIH+ARANA+HNHGLD DRL++AEA+V
Sbjct: 272 VNLVAALVRGMRVEDALIQLQVTVKRAAQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 331
Query: 783 GKGFYKKRISIHGKCRHGIMHRPECRLTVVVREITPEEEAKIARLKVHNFKKLSKRERRL 962
GKG + K+++ H K R GI+ P CRLTV+VRE TPEEEA+IARLKVHNFKK SKRER+L
Sbjct: 332 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTPEEEAEIARLKVHNFKKKSKRERQL 391
Query: 963 VPHKLIETTPVWGRKNKPTSQNSGAAV 1043
VPHKLIET+P+W R+ + S V
Sbjct: 392 VPHKLIETSPIWNRRGTKANHRSSELV 418
>pir||H96563 hypothetical protein F19K6.5 [imported] - Arabidopsis thaliana
gi|12323131|gb|AAG51551.1|AC037424_16 chloroplast 50S
ribosomal protein L22, putative; 25606-24374 [Arabidopsis
thaliana]
Length = 226
Score = 257 bits (657), Expect = 2e-67
Identities = 133/207 (64%), Positives = 166/207 (79%)
Frame = +3
Query: 423 GISSSTWLLANSPEETPVSSPLAPLSLLGSSKGEDQNQKAVSKPENVQAVLKGIKQSPKK 602
GIS+S L A E PVSSPL+ +LLGS G+++ QK + K + VQAVLK IKQSPKK
Sbjct: 22 GISTSRQLQAG---EEPVSSPLSSPALLGS--GKEEEQKIIPKRQKVQAVLKSIKQSPKK 76
Query: 603 VNLVAALVRGMLVKDALLQLQLTVKRAAKTVYQVIHSARANASHNHGLDSDRLIIAEAYV 782
VNLVAALVRGM V+DAL+QLQ+TVKRA++TVY+VIH+ARANA+HNHGLD DRL++AEA+V
Sbjct: 77 VNLVAALVRGMRVEDALMQLQVTVKRASQTVYRVIHAARANATHNHGLDPDRLLVAEAFV 136
Query: 783 GKGFYKKRISIHGKCRHGIMHRPECRLTVVVREITPEEEAKIARLKVHNFKKLSKRERRL 962
GKG + K+++ H K R GI+ P CRLTV+VRE T EEEA+IARLKVHNFKKL+KR+R+L
Sbjct: 137 GKGLFGKKVAYHAKGRSGIISIPRCRLTVIVRETTAEEEAEIARLKVHNFKKLNKRQRQL 196
Query: 963 VPHKLIETTPVWGRKNKPTSQNSGAAV 1043
VPHKLIET+P+W R+ + S V
Sbjct: 197 VPHKLIETSPIWNRRGTKGNHRSSELV 223
>dbj|BAB39116.1| P0686E09.8 [Oryza sativa (japonica cultivar-group)]
Length = 285
Score = 233 bits (595), Expect = 3e-60
Identities = 133/241 (55%), Positives = 170/241 (70%), Gaps = 3/241 (1%)
Frame = +3
Query: 327 LSSSFPQGQFQG---AWTTTSPSISRPMYHCFQHQGISSSTWLLANSPEETPVSSPLAPL 497
+++ F GQ+ A S ++ + ++ GIS++ LLA PVSSPL P
Sbjct: 43 VNAPFGLGQYANLLRAQAFASRGVALNFHQLIRNAGISTTRNLLAADDAMVPVSSPLTPP 102
Query: 498 SLLGSSKGEDQNQKAVSKPENVQAVLKGIKQSPKKVNLVAALVRGMLVKDALLQLQLTVK 677
LG + D+ + A+ K VQA+ K IKQSPKKVNLVA LVRGM V+DALLQLQ+TVK
Sbjct: 103 --LGDGEQTDK-KGAIVKRLKVQAIKKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVK 159
Query: 678 RAAKTVYQVIHSARANASHNHGLDSDRLIIAEAYVGKGFYKKRISIHGKCRHGIMHRPEC 857
RAAKTVY HSARANA+HNHGLD D+LI+ EA+VGKG Y KR+S H K R G+M RP C
Sbjct: 160 RAAKTVY---HSARANAAHNHGLDPDKLIVEEAFVGKGLYLKRLSYHAKGRCGVMVRPRC 216
Query: 858 RLTVVVREITPEEEAKIARLKVHNFKKLSKRERRLVPHKLIETTPVWGRKNKPTSQNSGA 1037
RLTVVVRE T EEEAKIA+L+V N+KKL+++E++L+PH+LIE +P W RK K + +GA
Sbjct: 217 RLTVVVREATAEEEAKIAKLRVSNYKKLTRKEKQLMPHRLIEVSPRWARKRK---EEAGA 273
Query: 1038 A 1040
A
Sbjct: 274 A 274
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,042,184,310
Number of Sequences: 1393205
Number of extensions: 23972457
Number of successful extensions: 69451
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 63139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69004
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 75223582428
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
